MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-090L04
Chromosome	19 (Build37)
Map Location	61,084,977 - 61,085,493
singlet/doublet	singlet
Overlap gene	Gprk5
Upstream gene	LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik, Nanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, LOC671322
Downstream gene	BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
Link	Open Mouse BAC browser

Click to get alignment info.

name	Slc18a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214084 MGI:106677
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdzd8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107368 MGI:2677270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100034727 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100034727
definition	note : ribosomal protein S12 pseudogene pseudo : _no_value

name	LOC100043073 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043073
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Emx2os (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329078 MGI:3052329
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Emx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13797 MGI:95388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab11fip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74998 MGI:1922248
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043087 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043087
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100043091 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043091
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 5 Proteins pseudo : _no_value

name	LOC100043093 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043093
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	D19Ertd737e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76539 MGI:1289174
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933412A08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74445 MGI:1921695
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 17 ESTs

name	Prlhr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226278 MGI:2135956
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2700078E11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78832 MGI:1926082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nanos1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:332397 MGI:2669254
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eif3s10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13669 MGI:95301
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810055E12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67894 MGI:1915144
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sfxn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94281 MGI:2137680
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prdx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11757 MGI:88034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gprk5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14773 MGI:109161
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC671322 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:671322
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins pseudo : _no_value

name	BC029127 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214368 MGI:2652824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins

name	LOC100043112 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043112
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	EG547091 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547091 MGI:3643428
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC433261 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433261
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 650 ESTs, 6 Proteins pseudo : _no_value

name	EG633057 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:633057 MGI:3648735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 2 Proteins

name	Csf2ra (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12982 MGI:1339754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043120 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 48 Proteins

name	Slc18a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353800 GeneID:214084 MGI:106677
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 18 (vesicular monoamine), member 2 transcript_id : NM_172523.2

name	Pdzd8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368577 GeneID:107368 MGI:2677270
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PDZ domain containing 8 transcript_id : NM_001033222.2

name	LOC100043073 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270529 GeneID:100043073
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical protein LOC100043073 transcript_id : XM_001479446.1

name	Emx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119964699 GeneID:13797 MGI:95388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : empty spiracles homolog 2 (Drosophila) transcript_id : NM_010132.2

name	Rab11fip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351808 GeneID:74998 MGI:1922248
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB11 family interacting protein 2 (class I) transcript_id : NM_001033172.2

name	LOC100043087 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270531 GeneID:100043087
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043087 transcript_id : XM_001479465.1

name	D19Ertd737e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801818 GeneID:76539 MGI:1289174
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 19, ERATO Doi 737, expressed transcript_id : NM_029648.4

name	4933412A08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270583 GeneID:74445 MGI:1921695
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 17 ESTs product : RIKEN cDNA 4933412A08 gene transcript_id : XM_001480761.1

name	Prlhr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42476093 GeneID:226278 MGI:2135956
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prolactin releasing hormone receptor transcript_id : NM_201615.1

name	2700078E11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037532 GeneID:78832 MGI:1926082
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2700078E11 gene transcript_id : NM_030197.1

name	Nanos1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872195 GeneID:332397 MGI:2669254
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nanos homolog 1 (Drosophila) transcript_id : NM_178421.3

name	Eif3s10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46575902 GeneID:13669 MGI:95301
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 3, subunit 10 (theta) transcript_id : NM_010123.2

name	1810055E12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366486 GeneID:67894 MGI:1915144
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810055E12 gene transcript_id : NM_026437.2

name	Sfxn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098134 GeneID:94281 MGI:2137680
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sideroflexin 4 transcript_id : NM_053198.2

name	Prdx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119637808 GeneID:11757 MGI:88034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxiredoxin 3 transcript_id : NM_007452.2

name	Gprk5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980924 GeneID:14773 MGI:109161
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor kinase 5 transcript_id : NM_018869.2

name	EG547091 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701563 GeneID:547091 MGI:3643428
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG547091 transcript_id : NM_001024731.1

name	EG633057 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94406051 GeneID:633057 MGI:3648735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 2 Proteins product : predicted gene, EG633057 transcript_id : XM_001002874.1

name	Csf2ra (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753533 GeneID:12982 MGI:1339754
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) transcript_id : NM_009970.1

name	LOC100043120 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270544 GeneID:100043120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 48 Proteins product : similar to IgH VDJ transcript_id : XM_001479536.1

name	Slc18a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369732 CCDS:CCDS29935.1 GeneID:214084 MGI:106677
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : vesicular monoamine transporter 2 product : solute carrier family 18 (vesicular monoamine), member 2 protein_id : NP_766111.1

name	Pdzd8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677508 CCDS:CCDS29936.1 GeneID:107368 MGI:2677270
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 exception : mismatches in translation product : PDZ domain containing 8 protein_id : NP_001028394.1

name	LOC100043073 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270530 GeneID:100043073
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479496.1

name	Emx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119964700 CCDS:CCDS29937.1 GeneID:13797 MGI:95388
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IGI] [Evidence IMP]; GO:0007420 - brain development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030900 - forebrain development [Evidence IGI] [Evidence IMP]; GO:0030182 - neuron differentiation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : empty spiracles homolog 2 protein_id : NP_034262.2

name	Rab11fip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677518 GeneID:74998 MGI:1922248
definition	codon_start : 1 exception : mismatches in translation product : Rab11-family interacting protein 2 protein_id : NP_001028344.1

name	LOC100043087 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270532 GeneID:100043087
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479515.1

name	D19Ertd737e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520379 CCDS:CCDS29939.1 GeneID:76539 MGI:1289174
definition	codon_start : 1 product : hypothetical protein LOC76539 protein_id : NP_083924.2

name	4933412A08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270584 GeneID:74445 MGI:1921695
definition	codon_start : 1 product : hypothetical protein LOC74445 protein_id : XP_001480811.1

name	Prlhr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42476094 CCDS:CCDS29940.1 GeneID:226278 MGI:2135956
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IDA]; GO:0004983 - neuropeptide Y receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007631 - feeding behavior [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IDA]; GO:0042445 - hormone metabolism [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : G protein-coupled receptor 10 protein_id : NP_963909.1

name	2700078E11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037533 GeneID:78832 MGI:1926082
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA] codon_start : 1 product : hypothetical protein LOC78832 protein_id : NP_084473.1

name	Nanos1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84872196 CCDS:CCDS29941.1 GeneID:332397 MGI:2669254
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006417 - regulation of protein biosynthesis [Evidence IEA]; GO:0006445 - regulation of translation [Evidence IEA] codon_start : 1 note : nanos 1 product : nanos homolog 1 protein_id : NP_848508.2

name	Eif3s10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46575903 GeneID:13669 MGI:95301
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003743 - translation initiation factor activity [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : eukaryotic translation initiation factor 3, subunit 10 (theta) protein_id : NP_034253.2

name	1810055E12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385934 CCDS:CCDS29942.1 GeneID:67894 MGI:1915144
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC67894 protein_id : NP_080713.1

name	Sfxn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61098135 CCDS:CCDS29943.1 GeneID:94281 MGI:2137680
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] [Evidence IEA] GO_function : GO:0005506 - iron ion binding [Evidence IEA]; GO:0008113 - protein-methionine-S-oxide reductase activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006826 - iron ion transport [Evidence IEA]; GO:0019538 - protein metabolism [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : sideroflexin 4 protein_id : NP_444428.2

name	Prdx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680690 CCDS:CCDS29944.1 GeneID:11757 MGI:88034
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016209 - antioxidant activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IPI]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]; GO:0051920 - peroxiredoxin activity [Evidence IEA] codon_start : 1 note : anti-oxidant protein 1; Prx III; peroxiredoxin III; antioxidant protein; mitochondrial Trx dependent peroxide reductase; mitochondrial thioredoxin dependent peroxide reductase product : peroxiredoxin 3 protein_id : NP_031478.1

name	Gprk5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980925 CCDS:CCDS29945.1 GeneID:14773 MGI:109161
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004703 - G-protein coupled receptor kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 exception : mismatches in translation product : G protein-coupled receptor kinase 5 protein_id : NP_061357.2

name	EG547091 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701564 GeneID:547091 MGI:3643428
definition	codon_start : 1 exception : unclassified translation discrepancy product : hypothetical protein LOC547091 protein_id : NP_001019902.1

name	EG633057 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94406052 GeneID:633057 MGI:3648735
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001002874.1

name	Csf2ra (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753534 CCDS:CCDS29946.1 GeneID:12982 MGI:1339754
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : GM-CSFRalpha product : colony stimulating factor 2 receptor alpha chain protein_id : NP_034100.1

name	LOC100043120 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270545 GeneID:100043120
definition	codon_start : 1 product : similar to IgH VDJ protein_id : XP_001479586.1

name	LOC100043093 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043093
definition	number : 3 pseudo : _no_value

name	LOC100043093 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043093
definition	number : 2 pseudo : _no_value

name	LOC100043093 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043093
definition	number : 1 pseudo : _no_value

name	LOC100043112 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043112
definition	number : 1 pseudo : _no_value

name	Emx2os (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:84872157 GeneID:329078 MGI:3052329
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : empty spiracles homolog 2 (Drosophila) opposite strand transcript_id : NR_002863.1

name	LOC100043091 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270533 GeneID:100043091
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 5 Proteins product : similar to Csf3r protein pseudo : _no_value transcript_id : XR_034222.1

name	LOC671322 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270585 GeneID:671322
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins product : hypothetical LOC671322 pseudo : _no_value transcript_id : XR_034837.1

name	BC029127 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149270542 GeneID:214368 MGI:2652824
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins product : cDNA sequence BC029127 transcript_id : XR_034235.1

name	LOC433261 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270543 GeneID:433261
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 650 ESTs, 6 Proteins product : similar to Sid393p pseudo : _no_value transcript_id : XR_034247.1

clone name	MSMg01-307N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154M02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-291M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300J11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-307P02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-505N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297P11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-149M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410N05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-126O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439N19
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-098P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216C12
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-090L04.T7 (MSMg01no090_l04.b1)	MSMg01-090L04.TJ (MSMg01no090_l04.g1)
ACC	AG308855	AG308856
length	700	861
length of high quality (start - end)	519 (43 - 561)	---
definition	CHROMAT_FILE: MSMg01no090_l04.b1 PHD_FILE: MSMg01no090_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:56 2005	CHROMAT_FILE: MSMg01no090_l04.g1 PHD_FILE: MSMg01no090_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:56 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT TCAGGACCTTATGCTTATACAGAAACACTTTTACATACTGCACAATCTCC CCACTGACTGCTTTCTGAATCGATCACACATCCCTCACCCTATCACAATC TAGCCTTCACTGCCAGGAGCCAGACTGGACCTGTTAAATCCAACGTAAAA GTGGGCTGATCGTAAGAAAGTCAAGATAGGCTTTCTATTTCTAGAGCAGA ACATCAACAGTTGCCAAAGGGAGGCTCTGCAGGACCTGCCTTAATGGCAA ATGAACCTGCTGTAATTAGCATATTAATAACATTTTATTTCTAACACCCC AAGAAATATCTCTCCAACCTCTTTACCACAAGGCTCTGAGGTAATCACAG AACAAAGAGCACAGGAGGAAACTACCAGTGTGTACCCCATACCCACTTCA GGAACTTCTCCTTGCTTTCTTCCCACAGACCAGCAGCCTGACTCCCTCCA AGTAGAAAGGGCTCATTTCAGACCCATGTGAAAACACTCATTCTAGAAGA GGCTTTCTGGAAGCAAGCTCTGGTATGTAGAGCAGTCATCCCCAGAATGA GACTTGCAGCTCTGAGGATCAATCCGGTTTGACTCCTGAAAGATAAGATC CCAAGGTGGAAGCCGGGCTTTAATGGCTAAAGAAGAGGGCCATAAAAGAC	GGATGATANTGGGTAGGGTTGGTGGACGTTTGGTCGGAGAATATCAGTTG AACTATAGAATGATCCGAGAAACTTATTGTCACAAGCTTTCCTATGCGCA AAACAATAAAACTAATATATTTTTAACCCTTCTACATTAATTTAATAATA TTACACAGTTTAAATACGTATGACTAACATCGAAATAATTATAGACCTAA ATATTAATCATTATATGGGTTTGTTTGTTGGTTGATAGTTTGAGTATGGA CCGGATTGTTTTTGGTTTTGGTCTACTGTCTGAGTTTTGGAATTATGGTC CAGTAGTTTAATAATTCACAGATTATGATCATTGAGGAACGATGGAAGTA AGGGAGATTTTGTAAGACCATTATATAATTAAACATAATCAGAATATAAG ATAATTGTTTTTTTGTAGTACCCCCCCGCCCCCCCGATTTATAGATGACA TAAAATATATAAGGATTAAGGTTGATCAAACATCATAAAAAAAAAAAAAA AAAATAGAAAGGGGAGGGAGAGTGATTATTTTCACACACTATATAAATAA AAAACAAAAAACAAACACAAAATATGGTACCCATTGACGAACAATAGCAA CATATACCAAATAACCATAGAAGAAAGATATAGAAAAAATACACCAATAA GAATATATTAAAAATATAAATAAATAGAATAGAATGTTGATCCCATTGTT ACCGATATTTCCTATTTACCCGCATAAGTAGTCATCTGCAACATCACGAT GGTTCACGCTATATTTCGCAAAGACTTCCCTTATTGCCACATTTGCACAA TGATTACAAAGCAATGTATTAGTATACGTTTGTTCCCCAAATATACACCA TATAATGCTTN
quality values	Open. Hide. 9 9 9 9 9 19 30 25 20 18 18 17 17 31 21 15 8 8 8 21 21 47 26 19 17 20 20 31 31 36 36 42 42 42 57 57 57 42 37 28 24 26 37 32 50 50 51 51 47 50 42 42 41 41 42 47 68 57 44 44 39 39 39 42 48 57 68 51 48 48 48 48 48 48 50 50 50 50 50 68 68 43 47 41 41 41 40 54 51 51 47 47 50 47 47 47 57 57 57 53 53 53 53 53 53 57 57 57 57 53 53 50 50 39 37 37 22 21 8 8 6 6 10 21 24 30 31 31 31 31 33 36 53 36 36 36 36 38 42 57 53 50 50 50 50 50 50 50 50 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 51 68 68 68 57 57 59 59 68 68 68 68 68 68 68 68 57 57 68 57 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 62 57 68 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 52 57 57 57 59 59 59 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 57 57 57 57 57 57 57 57 57 57 57 57 57 48 48 48 57 57 57 57 57 57 57 57 57 57 57 48 48 48 57 57 68 68 57 57 59 57 54 57 57 57 54 54 57 54 54 54 54 54 54 43 43 48 48 48 59 59 59 57 57 46 43 43 57 59 48 48 48 59 59 59 48 48 48 43 43 43 39 39 39 39 41 41 41 41 39 39 39 39 39 39 41 41 44 43 39 32 28 28 34 34 43 39 28 32 34 39 31 31 32 36 32 33 33 33 33 30 36 36 32 29 29 34 28 28 24 24 28 33 39 43 48 39 37 37 37 37 37 40 37 37 37 30 24 19 12 15 11 12 13 27 23 29 29 27 24 22 11 20 20 24 21 19 17 24 14 14 21 21 14 12 15 15 24 17 17 12 12 11 12 10 10 12 19 12 12 14 21 11 11 11 15 13 9 11 12 12 10 10 12 21 21 22 21 12 11 11 10 22 26 17 17 11 10 10 10 15 15 13 9 10 9 8 8 9 12 8 10 12 10 8 10 12 19 22 25 22 19 9 15 8 8 8 8 9 10 10 13 19 12 14 11 11 10 10 10 10 10 9 10 10 10 9 8 8 11 8 8 8 15 15 17 14 11 11 10 11 11 12 16 12 10 10 10 14 10 9 8 8 8 8 8 9 8 8 10 8 8	Open. Hide. 6 6 6 6 8 6 6 3 0 3 15 18 29 29 24 17 12 12 12 24 30 21 22 8 8 8 9 9 9 11 9 8 8 10 8 8 8 8 8 10 6 7 8 8 8 8 8 6 6 6 10 8 15 15 10 10 10 10 10 19 19 19 16 11 11 11 13 10 8 8 8 8 9 10 10 10 10 10 9 9 8 8 8 8 8 8 7 7 7 9 9 10 10 10 13 10 9 9 10 10 10 13 11 11 11 10 10 10 10 10 10 10 8 8 8 8 8 8 10 10 10 8 8 6 6 6 8 8 8 10 8 8 6 6 8 8 11 9 9 11 9 9 8 8 6 6 8 8 8 8 6 6 8 9 8 8 8 8 10 10 10 16 16 8 8 8 8 8 8 8 10 10 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 6 6 8 8 11 9 10 10 10 10 8 8 8 8 8 8 8 6 8 6 6 6 6 8 10 13 12 10 8 8 9 8 8 8 10 8 8 11 10 10 8 8 8 8 9 8 8 8 8 6 6 8 8 11 11 8 8 6 6 6 8 8 7 7 8 8 8 8 6 6 6 6 8 8 10 11 11 11 11 11 11 10 10 9 9 8 8 8 8 8 8 8 8 8 9 8 8 6 6 8 8 8 8 6 6 8 8 8 8 8 8 10 8 8 10 9 11 11 10 13 10 10 8 8 8 8 8 8 9 9 9 9 9 10 15 13 6 6 6 6 6 6 8 8 8 8 6 6 6 8 6 6 6 8 8 8 8 8 8 8 10 8 11 11 10 13 10 10 10 10 10 8 8 8 8 8 8 11 8 10 8 10 8 8 8 8 8 8 8 10 10 8 8 10 8 8 8 6 6 8 8 8 8 8 11 11 8 8 8 8 10 9 8 8 6 6 6 7 11 12 8 8 8 8 8 10 10 10 12 10 10 12 8 9 8 8 10 10 10 9 8 8 8 8 9 9 15 8 8 8 8 8 8 8 10 6 6 8 8 9 9 8 8 10 10 10 9 9 10 10 15 14 12 12 9 9 10 9 9 10 8 8 8 8 8 8 8 8 6 8 8 8 8 10 10 10 17 15 22 16 25 25 25 27 32 37 35 23 18 13 13 13 13 11 11 10 13 10 8 8 8 8 8 12 10 11 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 10 12 10 8 8 8 7 6 8 11 9 9 12 12 14 10 10 6 6 8 6 9 10 10 6 6 8 8 8 8 8 8 8 14 14 11 12 12 12 11 16 24 15 10 10 10 10 10 10 8 9 9 8 10 8 8 8 8 10 10 11 11 11 11 11 12 13 8 8 8 6 6 8 8 8 8 8 8 8 12 11 12 11 10 8 10 10 10 10 10 14 14 10 10 8 8 8 8 8 8 11 10 11 8 8 6 6 6 8 8 10 10 11 14 8 8 7 6 8 8 8 8 8 12 11 10 9 8 8 8 6 6 8 8 10 12 15 10 11 8 8 8 8 8 10 13 10 10 8 8 8 8 9 9 9 10 10 10 6 6 6 6 8 8 8 10 16 11 9 8 10 8 8 8 10 12 12 11 11 11 11 10 8 8 8 8 10 8 8 8 12 13 15 8 8 8 8 8 8 8 8 6 6 8 8 10 8 8 8 8 8 8 6 6 8 6 6 8 8 8 8 7 7 8 9 9 11 11 12 12 10 10 11 11 11 11 9 9 9 9 9 10 11 12 12 16 11 13 9 9 9 10 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 6 8 6 6 8 8 8 8 8 8 8 8 8 11 8 8 8 8 8 8 7 6 10 6 6 6 6 9 11 11 16 21 12 8 8 9 9 10 8 8 6 10 7 6 8 8 8 8 9 11 11 11 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no090_l04.b1 MSMg01no090_l04.b1 CHROMAT_FILE:
MSMg01no090_l04.b1 PHD_FILE: MSMg01no090_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:56 2005
         (519 letters)



>mm_chr19_61084774_61085693
          Length = 920

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%), Gaps = 3/518 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggaccttatgcttatacagaaacacttttacatactgcacaatctccccact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ggaattcaggaccttatgcttatacagaaacacttttacatactgcacaatctccccact 661

                                                                       
Query: 64  gactgctttctg-aatcg-atcacacatccctcaccctatcacaatctagccttcactgc 121
           |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gactgctttctgaaat-gtatcacacatccctcaccctatcacaatctagccttcactgc 602

                                                                       
Query: 122 caggagccagactggacctgttaaatccaacgtaaaagtgggctgatcgtaagaaagtca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caggagccagactggacctgttaaatccaacgtaaaagtgggctgatcgtaagaaagtca 542

                                                                       
Query: 182 agataggctttctatttctagagcagaacatcaacagttgccaaagggaggctctgcagg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agataggctttctatttctagagcagaacatcaacagttgccaaagggaggctctgcagg 482

                                                                       
Query: 242 acctgccttaatggcaaatgaacctgctgtaattagcatattaataacattttatttcta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acctgccttaatggcaaatgaacctgctgtaattagcatattaataacattttatttcta 422

                                                                       
Query: 302 acaccccaagaaatatctctccaacctctttaccacaaggctctgaggtaatcacagaac 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acaccccaagaaatatctctccaacctctttaccacaaggctctgaggtaatcacagaac 362

                                                                       
Query: 362 aaagagcacaggaggaaactaccagtgtgtaccccatacccacttcaggaacttctcctt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaagagcacaggaggaaactaccagtgtgtaccccatacccacttcaggaacttctcctt 302

                                                                       
Query: 422 gctttcttcccacagaccagcagcctgactccctccaagtagaaagggctcatttcagac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gctttcttcccacagaccagcagcctgactccctccaagtagaaagggctcatttcagac 242

                                                 
Query: 482 ccatgtgaaaacactcattctagaagaggctttctgga 519
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccatgtgaaaacactcattctagaagaggctttctgga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space:   463190
Effective search space used:   463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information