BAC Information

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BAC

Clone NameMSMg01-091J11
Chromosome19 (Build37)
Map Location 20,518,574 - 20,518,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091J11.T7 (MSMg01no091_j11.b1)MSMg01-091J11.TJ (MSMg01no091_j11.g1)
ACCAG309499AG309500
length695711
length of high quality
(start - end)
225 (44 - 268)205 (84 - 288)
definitionCHROMAT_FILE: MSMg01no091_j11.b1 PHD_FILE: MSMg01no091_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:09 2005CHROMAT_FILE: MSMg01no091_j11.g1 PHD_FILE: MSMg01no091_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGC
GGAATTCACCCTCTCCCTTGATGTCAACACTGACAAAATAAATGAATATG
TAAGATCCCTGTCCATTTTGGCTAGCTGTGATATAATATGTGATATGGTG
CTCTTTTGTTCTGGAGTCTAAAAAGTGCAGTATCTAGGGATCAACATACT
CAGCAAGGGGCTCCTTCATGTCAACCTGTGAAAAAGAAAAATTACCCATC
TGGCAAGCCTTTTTGTAATGCCTTTAATGGGTTAAACCTGCCCACGAATT
CTTTAACGGACTGATTGCCTTACCTCTCCATACTGCTATATTGCCAACTA
TCTCTCAGCTTGAGTTTAATGGAGAGAAAGTCTCATATCATACTTGACTC
CTTGAATAACTCTGAATATTTTGATGTGGCAATGTATATTTCAGGACATC
CTCTTTTTTTCTTTTCACTTTGCCGATCTTACATAACTCACAGTATCCTG
AAACCTAACTAAATTTCCTGATTTACAGCCGTGTTTTTCTCTTGACTTCC
AACCCATGATTTCCCACAAATGTACCCGCCTCACTTCTTGTTTTCACTAA
CGCCGCATTTCTCACTTTACACGTAACGCCTTACTGCTTCCCCTAACTTT
ATACAACCATGATTCTTTCCACGTCACCGACATCTTCATTTACTG
TTCCTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGCCAATCAAGAGAC
TCTGTCTCAAAAAAAAAAAAAAAATAAAACGCAGGTCACACTTCAAGCTT
TACCTCTCACCATTATAAATATGTATACACCACAAACTCACACACACACA
CACATACACACGTACACACATACAGTCACACATATACCCCCCCACACACA
CACATGTACACACATACAGACACACATACACATACACATACACACACACA
CATACACACACACACACACACACACATACACTCATACACACCTATTACTC
AATCAGTAGACCAAAAATGATAGTTCACTAGAAATGGGGAGTCTGAAACA
GCATGATTCCCATGACTTCTAGGCCACCCTTAGACTACATAGTGGCTACT
TCAATAAACAGATAACAACATACATTACAAGATTACTACCAACAACACCA
ATAAGAATTACCCCAATACCACCACGACCCCATTCATAAATACCATATTT
CCTATTTGACACACACTATCATATACCCACTGTACACACTACCTTAATCT
TAATAATATCTAAGACCCATACTGAATATCCATTGCCCCTTTCACGGAAT
TCCACGTAACCTCTACACATTATAATCCCTTTCCGTACCCGATTAACAAA
ACACACAACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_j11.b1 MSMg01no091_j11.b1 CHROMAT_FILE:
MSMg01no091_j11.b1 PHD_FILE: MSMg01no091_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:09 2005
         (225 letters)



>mm_chr19_20518366_20518990
          Length = 625

 Score =  337 bits (174), Expect = 4e-97
 Identities = 207/218 (94%), Gaps = 2/218 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcaccctctcccttgatgtcaacactgacaaaataaatgaatatgtaagatccctg 68
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaattcaccccctttcttgatgtcaacactgacaaaataaatgaatatgtaagatccctg 366

                                                                       
Query: 69  tccattttg-gctagctgtgatataatatgtgatatggtgctcttttgttctggagtcta 127
           ||||||||| | ||||||||||||||||| |||||||||||| || |||||||||| |||
Sbjct: 365 tccattttgag-tagctgtgatataatatatgatatggtgctattctgttctggagacta 307

                                                                       
Query: 128 aaaagtgcagtatctagggatcaacatactcagcaaggggctccttcatgtcaacctgtg 187
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaaagtgcagtatctagggaccaacatactcagcaaggggctccttcatgtcaacctgtg 247

                                                 
Query: 188 aaaaagaaaaattacccatctggcaagcctttttgtaa 225
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 246 aaaaagaaaaattacccttctggcaagcctttttgtaa 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)