BAC Information

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BAC

Clone NameMSMg01-092A03
Chromosome19 (Build37)
Map Location 19,932,777 - 19,933,031
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092A03.T7 (MSMg01no092_a03.b1)MSMg01-092A03.TJ (MSMg01no092_a03.g1)
ACCAG309800AG309801
length820807
length of high quality
(start - end)
263 (106 - 368)213 (131 - 343)
definitionCHROMAT_FILE: MSMg01no092_a03.b1 PHD_FILE: MSMg01no092_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:42 2005CHROMAT_FILE: MSMg01no092_a03.g1 PHD_FILE: MSMg01no092_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTCTTTCCCTTTTTCTCCTTCCTTTTCTCTTCCTTTCCCCNCGCACC
CCNNNATTAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTAAAGATGGAAACATATTTTGGAGTAGATAGAAAT
TTAAGATGACAATACAGTTTAAGAGACATATGTACTCGAGGCAACAACAT
AATGTCTGACTTTCAGTGCATTAAGGGTAATGATTTTGTGGAGGATTTCA
TCAAAGTATCCAGTAAACCAAAGCCATCAAGATACATAGAACATTTTCAA
AAATCTTCAAAATGATTTGTTGACTGTCTTCTGCCAGCTCCCATATACCA
CTCTACAGCAAAACATCCAAAGCCAATGAAGTATGCCTTGAACCAATGAA
GCAACATCTCTATTTTCCTAATCTATCTTTGTTACAGCCAAGAATTCCCT
GTACTATCCTAACATTCTGTGTATTCTCCACTGTGGCAGACATCGTTTAA
AAGCTAGTCGATAACGCAAGTGCCTACAGGTCCTCACTGAATGATATTAG
TGCTCAATATTGAACGTTAATCCCCGTTGTGCCTGCCTCTGTGCCCTCAG
CGGACGCCTCTGCACCTTATATCCCCCCTCTCGTCCCCTCCCCCTTCCTT
GTATCCCATCAGTTCCAGCCTTCATCACATCCCATTCCATTTATGACCAC
TTATTTGGCTTCTATTCACCCGGTTAATTGTTTTATGCCTACCGTAGTCC
TCCCCCGAATCCGGTCTTCCTTTCCTCCTATTCCACTTCATCTCTCCACT
AACGTCTTTGGTTTGTTTTG
CTTTTTCCTCTNTCCCTTNTTTTTNNTCTTCTTTCTTTCCCTTCTATCCC
NCNACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAAGGAAACACACCC
TACCCAACCTGCAGGACACAATGAAAGCACCGGTAAGAGGAAAACTCAGA
GCTCTGAGTGCCTACGAAAAGAAACTGGACAGAGCATATACTAAAGGCTT
GACAGCACACCTGAAAGTTCCGCAACAATAAGAAACAAATACTCCCAAGA
GGAGTAGAAGGCAGGAAATAATCAAACTCAAGGTTGAGATCAATCAAGTC
GAAACAAAAAGAACTATACAAAGAATCAACAAAACCAGGAGCTAGTTCTT
TGAGAAAATCAACATGACAGGTATTCTATTGCGCCAGTCTAACCAGAGGT
CACCGGAACCGTATCCTATCTACCCACATCATATATGAACTGTCCAACAG
AACCTGAGGCCATTCAAATAATCCTCAGAACTTACGACTTAAAACTATAC
TCCCCCTACGCTGGAAAACCTGGATGAACTGCAGAAATTTCTAGATCCAT
CCCCAGGGCCCATAATCCAATCCTTATTCCGTTAAGCCCTCCCAACAGGC
CCCCCAACCCCCTAAAGAACCTACACACCGGTCCTTATAAAGCCCTCCTA
ATAACCAAAACCCCCTACCCCTCAATGGCCTTAGCGCAATAATCTTGCCA
TAACCCCTCTAACACCCACCTAACATTCACCAACCCCCTCAACCTATTTT
CCACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_a03.b1 MSMg01no092_a03.b1 CHROMAT_FILE:
MSMg01no092_a03.b1 PHD_FILE: MSMg01no092_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:42 2005
         (263 letters)



>mm_chr19_19932573_19933235
          Length = 663

 Score =  478 bits (247), Expect = e-139
 Identities = 253/255 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaagatggaaacatattttggagtagatagaaatttaagatgacaatacagtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaattctaaagatggaaacatattttggagtagatagaaatttaagatgacaatacagtt 400

                                                                       
Query: 65  taagagacatatgtactcgaggcaacaacataatgtctgactttcagtgcattaagggta 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 taagagacatatgtacacgaggcaacaacataatgtctgactttcagtgcattaagggta 340

                                                                       
Query: 125 atgattttgtggaggatttcatcaaagtatccagtaaaccaaagccatcaagatacatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atgattttgtggaggatttcatcaaagtatccagtaaaccaaagccatcaagatacatag 280

                                                                       
Query: 185 aacattttcaaaaatcttcaaaatgatttgttgactgtcttctgccagctcccatatacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 279 aacattttcaaaaatcttcaaaatgatttgttgactgtcttctgccagcacccatatacc 220

                          
Query: 245 actctacagcaaaac 259
           |||||||||||||||
Sbjct: 219 actctacagcaaaac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)