BAC Information

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BAC

Clone NameMSMg01-092L09
Chromosome19 (Build37)
Map Location 47,944,936 - 47,945,087
singlet/doubletsinglet
Overlap geneGsto2
Upstream geneCnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1
Downstream geneBC063749, Gm969, LOC670576, Sorcs3, LOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092L09.T7 (MSMg01no092_l09.b1)MSMg01-092L09.TJ (MSMg01no092_l09.g1)
ACCAG310333AG310334
length722743
length of high quality
(start - end)
152 (130 - 281)---
definitionCHROMAT_FILE: MSMg01no092_l09.b1 PHD_FILE: MSMg01no092_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:40 2005CHROMAT_FILE: MSMg01no092_l09.g1 PHD_FILE: MSMg01no092_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGCATGTTTCCAATCAAAGCATGGATTCAAACATCCCTACGG
TTTCCTAATTCACACAGAGTTTCTACTGACACACCTTGCTATTAGCGCAA
CTCCCACGGGATCACGGATGGAGTTCCAGACTAAAACTGTAGTTGAGTCA
TTATTCTGAGGATTTCAAAAGATTTCCTATTCTGTAGGGGAAATGATCTT
ATCATTACTAGCCAAGACATTCTGGAGGGGTGAGAATTTCAAAGGCCCAG
GGTTGTCCATCTTGCAAGACATGTGATAAGGCTTTGCTATTTTAGTAAAA
AAAAAAAAAATGTTTAGATTCACAAATGAATCTGTCATTGTGTGCTCCGC
TTTTCTGTACATAAACTCTCCACCATTGCAGCCCACACTGTGGACCTTTT
TATACTTTTTTGAACTTTCCAAGTTCCTTCCCCCTTCTACGCGCTTTGTC
TTGCACACATAATCTCGCTTTTTCCTGTCAACTCTTTTTGCGAAGGATGT
CTATCGACTCCTTGTCACTGATTTTCGGTACTTGAATCCCTTCTCAAATA
TGTGAATGGTCACTCTTTATTGCTTTCTCTTTCCTTTCTCGGAACTCTAT
CAACCCAACCTCGCCGGCGCGTCGGTTCCAACTCCTTTTTCCGTCTTCAC
CATCTCCTCTATTCCCCCTTTG
AGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATGGACATGTGTGTGAGCAGAAAACATC
TCTGGTATTCTTATTTACCCCCCACTCGCTCACAAGATAAAGCTAAAAGG
ACAGATTGAAGATGCGCAGTTTTTTGAGACAACTTCCAAGAAGTGCACAG
AATACTAAAATACTCCATGTCTCCAACTGAGGCTTTTGTGTCTCTGGCTA
AGGGAATTGTGCCCCCCCCAAAAAAATTCTTTTTGCATGGTTGTATCCCC
CTTTTGTGGCCTATTTATGTGACAAATGGGTATGAACCCAGACCCTGAGC
ACCGGTTGGTGTTTTGCAACTGTTCACCGTGGCTGTAAAGGAATAGCATG
AAGCTGTTTCTTTGTGCCAAAGCATTATGATTTGAAAACGGCGTTTAACG
TTTCTCTTCTACCATCTGGCCCGCCTGAATCATCCTGTGACCCTTTCCTG
CTTGTCCTTTTCTCCATTATCTCCAATAACTTCCTTCCCCATTACATTTC
CTGCCCGCATCCCCCCCCCCCTTTTTGAGTTTCTTCACCACTCTATTCGA
ACCTTTGAATGCAACGCTTGTTCGCCTTGTCCTTACTGTACCCTCTCTCC
CCCTCTTAAAATTCCCCTTCTTGCTCTTCTCTGTCCTTCCTTCTCTCATA
CACAGCCTATCACCTTCCCGCAGCCTTGTCCCCTCTCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_l09.b1 MSMg01no092_l09.b1 CHROMAT_FILE:
MSMg01no092_l09.b1 PHD_FILE: MSMg01no092_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:40 2005
         (152 letters)



>mm_chr19_47944736_47945287
          Length = 552

 Score =  294 bits (152), Expect = 2e-84
 Identities = 152/152 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaccttgctattagcgcaactcccacgggatcacggatggagttccagactaaaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaccttgctattagcgcaactcccacgggatcacggatggagttccagactaaaactg 260

                                                                       
Query: 61  tagttgagtcattattctgaggatttcaaaagatttcctattctgtaggggaaatgatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttgagtcattattctgaggatttcaaaagatttcctattctgtaggggaaatgatct 320

                                           
Query: 121 tatcattactagccaagacattctggaggggt 152
           ||||||||||||||||||||||||||||||||
Sbjct: 321 tatcattactagccaagacattctggaggggt 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)