BAC Information

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BAC

Clone NameMSMg01-092L19
Chromosome19 (Build37)
Map Location 18,631,998 - 18,745,990
singlet/doubletdoublet
Overlap geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik
Upstream genePcsk5, Eef1a1-ps1
Downstream geneLOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092L19.T7 (MSMg01no092_l19.b1)MSMg01-092L19.TJ (MSMg01no092_l19.g1)
ACCAG310353AG310354
length697708
length of high quality
(start - end)
312 (49 - 360)178 (77 - 254)
definitionCHROMAT_FILE: MSMg01no092_l19.b1 PHD_FILE: MSMg01no092_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:42 2005CHROMAT_FILE: MSMg01no092_l19.g1 PHD_FILE: MSMg01no092_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,631,998 - 18,632,304)(18,745,813 - 18,745,990)
sequence
NTTAAATCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACAGCACAGACCTGTGCCTTAATGGATCCTTCCTGTCTCAT
TCTCTCCTTTCACATTTTGTTTATCCCATTCTCTTCCATTTATCAACTTG
GTTTTTATCTATTTCTATTTCTTTCTCCACTCTTTGATCTTCTCTCTTTC
CCTTGAATAAGATTGTCTCTAGGATTCCTTGTCTCTTCTCATATACTCTC
CCATAGGCAAGTAGCTTTGCATTTCTATTTCAGCAGAAAATTCATAGTAA
ACAAGGACCTCTTTCTCAAGCTCTATATAATAGTCATATTTTACATATGA
TGTGACCATTTATGTATGTTAAAGCCCCCTACTACAGACAACAAATGATG
TGAGCTCAATTTTTAAGAATCCTTTTTTAAATCATTGAAGCTAGTGTCCT
CTAGTGTTCAGTAGCAGAATTTGTGACAGATGTTAAAGTTGTTCTGTATA
GACACCTAGATATTAAATTAAATTCCTAGTTCTTCTGTAGTTCAAAATTC
CCTATATTATTTGAGAGATTCTACACTAATGGATCTTAATATCATTTGAT
CAGAATCTTACCTATTCTTATTAGAATCTATTTCCTGTCACTGTTCGTTC
ATGATGTTTAACTTGATAGACTTTCCTAGCCGCCCCAAATTTTTTAT
TTCGATGATAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGTACTTACTCGCAGACGACAAGA
ACATAAAGCCGGCTCCGGTGCCCGCTCTCTTTTTTCCTTACCAAGATGCA
CATTTTGCAACTCCGGGATCTCTTCCTCCCTCCACCATCCGGTCAGAGCC
ACTCGTTAGTACCGTTCAGTTCTCTACAAAAAGTGCACACTCGCTCCGGT
GGCTCCGGGTGAGGTGGGAGGCAGTCCCACGGGACCGCCCGCGCGCAGGT
GACCGCGGGCTCCGCGAATTATCTCACGACGCGGGCCCCGAGACTGCGGC
GTGCGGTCGGTTGTGCGCGCCTTATCCGAACCATTGGAACGCGTTGATGA
TCTTCCAGAAGTGCTCGCGCCCCATACGCTCCTCGTCCTCCGTGGTGCCG
CGCGTCGGGTTTCCTTTATGTTTGGCCGAACCCATTCGTCCGTCGTAGAA
TTGCACCTCCAAGACGACGATTCCTTATCCCGTCCTAGTATGTACCGATA
ATATATTTATATCCTCCTTGTCATTTTATTAATTGACCTCTTATTCCAAC
TTACCAGTTCCCATTTGTCCTCCCTCAGTATTACCTGCTCGTAGCTCTCT
TTATTAACTTATTACTTTTCCCTATACACTACACCACCTCCTAATTTACG
CTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_l19.b1 MSMg01no092_l19.b1 CHROMAT_FILE:
MSMg01no092_l19.b1 PHD_FILE: MSMg01no092_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:42 2005
         (312 letters)



>mm_chr19_18631795_18632506
          Length = 712

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacagcacagacctgtgccttaatggatccttcctgtctcattctctcctttc 63
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattccaccgcacagacctgtgccttaatggattcttcctgtctcattctctcctttc 263

                                                                       
Query: 64  acattttgtttatcccattctcttccatttatcaacttggtttttatctatttctatttc 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattttgtttatctcattctcttccatttatcaacttggtttttatctatttctatttc 323

                                                                       
Query: 124 tttctccactctttgatcttctctctttcccttgaataagattgtctctaggattccttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttctccactctttgatcttctctctttcccttgaataagattgtctctaggattccttg 383

                                                                       
Query: 184 tctcttctcatatactctcccataggcaagtagctttgcatttctatttcagcagaaaat 243
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctcttctcacacactctcccataggcaagtagctttgcatttctatttcagcagaaaat 443

                                                                       
Query: 244 tcatagtaaacaaggacctctttctcaagctctatataatagtcatattttacatatgat 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 tcatagtaaacaaggacctctttctcaagctcaatataatagtcatattttacatatgat 503

                  
Query: 304 gtgacca 310
           |||||||
Sbjct: 504 gtgacca 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no092_l19.g1 MSMg01no092_l19.g1 CHROMAT_FILE:
MSMg01no092_l19.g1 PHD_FILE: MSMg01no092_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:42 2005
         (178 letters)



>mm_chr19_18745613_18746190
          Length = 578

 Score =  306 bits (158), Expect = 7e-88
 Identities = 173/178 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtacttactcgcagacgacaagaacataaagccggctccggtgcccgctctcttttttc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cgtacttactcgcagaccacaagaacataaagccggctccggtgcccgctctcttttttc 319

                                                                       
Query: 61  cttaccaagatgcacattttgcaactccgggatctcttcctccctccaccatccggtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cttaccaagatgcacattttgcaactccgggatctcttcctccctccaccatccggtcag 259

                                                                     
Query: 121 agccactcgttagtaccgttcagttctctacaaaaagtgcacactcgctccggtggct 178
           |||||||||  || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 agccactcggcagcaccgttcagttctctacaaaaagtgcacactcgctccggcggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)