BAC Information

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BAC

Clone NameMSMg01-093D21
Chromosome19 (Build37)
Map Location 9,654,656 - 9,654,899
singlet/doubletsinglet
Overlap geneStxbp3b
Upstream geneEG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152
Downstream geneLOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093D21.T7 (MSMg01no093_d21.b1)MSMg01-093D21.TJ (MSMg01no093_d21.g1)
ACCAG310737AG310738
length1,2531,370
length of high quality
(start - end)
179 (71 - 249)245 (70 - 314)
definitionCHROMAT_FILE: MSMg01no093_d21.b1 PHD_FILE: MSMg01no093_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:36 2005CHROMAT_FILE: MSMg01no093_d21.g1 PHD_FILE: MSMg01no093_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:36 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATTGCGCGCTATXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGA
CATCCTTAGGCCCCTTAAGGAAGTTGAAAATATCATTTCGAGTGAGGTAA
CCCCTTCAGAACAGAACACACACCCCATATACTCACTGATAGGTGAATAT
TAGCTCAGATGCTTGGAATACCCAATGTACAATTCACAGAACAAATGAAG
CTCAAGGAATGAAGGCCAAAGTATGATTACTCTGGTTCTCCTTAGAAAGG
GGAACAGAATACCCATGGGAGGAGTTAGAGACAGAGTGTCTAGCAGAGAC
TGAAGTAAAGGCCATCCAGAGTCTGCTCCACCTTGGCATCCATCTCACAT
ACTGCCACCAAATCCAGACTTTACTGTGCATGCCAACACGTGTTTTTTTA
CAGCATCCTGATATATCTGTCTCCTGATAGTCTCTTCCCCCGCCTGACTT
ATACCCAGGTGCTATGTTCTTATTCTTTCATTCTACTTATCACATTCTCC
CTCTTTTCATATTTTCACTATTGTTCCTCATCTTTCTGATTCATTTTGCT
TTCTTTACTTCTTTATTTATTACCTTGACTTCTTCTTCTTTTCTCTCCCA
TTTCTCAGTTCCTTATTTCCTTCATTTCTTTATATTTTTCCTCTTCTTTA
TCTTACTTTCTTCTTGTTGCTTCTTTCTCTTCTATTTCCTTTTCTTGCTT
TCTTTTTCCTTTCTCTCTTCTCTTTTCTCTTTTTTCTCTTTTCTTTTTTC
TTTTTTCTCTTTTTTTTTTTCCTTTTATCTTATTTTTTTTATTTCTCTCT
TCTTTTCTTTTCTCTTCTTTTCTTTTTTTTTCTTTTTCCTCCTTTTTCTT
TTTTTTTTTTTTTTTTTTTCCCCTCTCTCTTTTCCTCTTTCTTTCTTATT
TATCCCCCCCTCTTTTTCTTCTTTTTTCTTTTTCTTTTCTTCCTTTTCCT
TTTTTTTCTTTTTCCCCCTCTTATTTTTCTCCTATCTCCTCTTTTTCTCA
TCTCTCTTATTTCTTACTTCTTTTCCTCTTTTCTTTCTTTCTTTCTTTTT
TCTTCTTTTTCTCTTTTCTTCTTTTATCTTTCCTTTTATTTTTTTCTTTT
TTTCCTCATTTTTTTTACTTCTTTCTCTCCCTTTGTACTTTTCTTATATT
CACTTCTACTCTCCTACTCTATTTCTTATACTCTTTATATCTTTCTTCTT
ATTTAATCTATCCATTATTCCTCTTTCTATGCTCTCCTTTTTTTCTCTTC
CCA
TTTTAACATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAGATGGAAGTCACTATCTTTTACAAAGCA
CTTGGTAGCCTTTTGGAGAAGGTACCATCGTTTTGAAAAAGATGAGGGTG
ATACTGGGGAATATAAATCAGTAATTCACTTTTAGACAGAAGTAGTAGCT
TAGTATAGGCTTAAAGTAAAATGTCCCCTGCTCACATTCAAAAATATGGG
ACAAGTAGGTATTTTGAGACTAATAGTAAGAGTGTGTGTATTTGTGTGTG
TGTATAATTTATGCTCCTTTGTTTTTTCTTTTTTCCTCTCTTTTCTTTTT
TCTTATCTTTTTTTTTTTCCTCTTTATTTTTTCTNCTCTTCTTCCTTTTT
TTTTTTTCTTTTTTTTTAACTCACTCTTTTTCTTTCTTTTTTTTATTTTA
TTTCCTCCTTTTTTTTTTTCCCCCCCCCCCCTTTTTTTTTTTTTTCTTTT
CTTAAAAAAAAAAAGAGGGTGTTTTTTTCCTCTTTTTTCTTTTTTCTCTT
CCTTTTTTCTTTTCTTTCTTTTTCTTTTTCCTTTCTTCATCTTCTTCCTT
TTCTCTCTTCTTCTTTTCTATTATTCTCTTCTTTCTCTGTTTTTCTTTAT
CTTTCTTCTTTCTTTTTTTTCTTTTTTTTTCTTTTTCTCTTTTTTCACTT
TTCTTTCTTTCTCTTTTTTTTTTATCTCTTTTTTTTTTTTCCATCCTTCA
TTATTTTCTCTTTTTTCCCTTCTCTCTTTCTCTTCTTTCTTTTTTTCTTT
TTTCCTTTTTTTTTATTCCTTTATTTACTCTTCTTTCACTTTTTTTTCCT
TCTACTTTTTTTCTTTTTTTCTCTTTTTCTCTTCTTTTCTTTTCTTTCTT
TCCATTTCTTTTACCTTTTTTCTTTTTTTTTTTTTCTTCTTTTTCTTTCT
CTTCTCTCTCTTACTTTTTCTCTTTTTTATATCTCTTCTTCTTTCTCTCT
CTCTTTTTTTTTTATTTCTTCTCTCTCTCCTACTTTCATTTTTTTTTTTC
CTTCCCTATTTCTTTTCTTTTTCTTTATCTTTTCTCTTTCTTTTTCTTCT
TCTCTATTCTTTTTTCTTTTCTTCCTTTCTATCTTCTATCTCTTTCATCT
CTCCTTCTATTTTTATCTGCTTTTTTACTCTTTTTTTTTTCTTCTTTTTT
CTCTATTTCTTTTTTTATCTATTTCCCTAACTTCTTTCCCTTTTCTTCTT
TCTTCTTCTTTATTTTTCTTCTCTTTTCTTTCATACCTTTTCTCTACCTT
TTATTCTTTTCTTCCCCTCTCTCTTTCCTATCTTTTTCCTCCTCCCATTT
CACCTTCTTTTTCTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_d21.g1 MSMg01no093_d21.g1 CHROMAT_FILE:
MSMg01no093_d21.g1 PHD_FILE: MSMg01no093_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:36 2005
         (245 letters)



>mm_chr19_9654456_9655100
          Length = 645

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagatggaagtcactatcttttacaaagcacttggtagccttttggagaaggtaccatc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 atagatggaagtcgctatcttttacaaagcacttggtagccttttggagaaggtaccatt 260

                                                                       
Query: 61  gttttgaaaaagatgagggtgatactggggaatataaatcagtaattcacttttagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgaaaaagatgagggtgatactggggaatataaatcagtaattcacttttagacag 320

                                                                       
Query: 121 aagtagtagcttagtataggcttaaagtaaaatgtcccctgctcacattcaaaaatatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtagtagcttagtataggcttaaagtaaaatgtcccctgctcacattcaaaaatatgg 380

                                                                       
Query: 181 gacaagtaggtattttgagactaatagtaagagtgtgtgtatttgtgtgtgtgtataatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaagtaggtattttgagactaatagtaagagtgtgtgtatttgtgtgtgtgtataatt 440

               
Query: 241 tatg 244
           ||||
Sbjct: 441 tatg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)