BAC Information

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BAC

Clone NameMSMg01-094F14
Chromosome19 (Build37)
Map Location 13,559,326 - 13,559,643
singlet/doubletsinglet
Overlap genenone
Upstream geneDtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475
Downstream geneGA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094F14.T7 (MSMg01no094_f14.b1)MSMg01-094F14.TJ (MSMg01no094_f14.g1)
ACCAG311545AG311546
length790672
length of high quality
(start - end)
94 (189 - 282)319 (54 - 372)
definitionCHROMAT_FILE: MSMg01no094_f14.b1 PHD_FILE: MSMg01no094_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:57 2005CHROMAT_FILE: MSMg01no094_f14.g1 PHD_FILE: MSMg01no094_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTTTCCNNNNTTCNNNNCNNN
TTTTTATGCTGTTTTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCTTCATCTGCTTCAGAGCTACTAAGAGCTG
GCTTCCTGAGCTCATCTAGTGACGAGTATCCTTACCCCCCTCCGCTAATT
GATCTTTTTTCTTTTCTTTTTTCTTTTCCTTCCTTCTAATCTCTCCCCAG
GTATTCTTACCTGACCTAAACTTTTCCTTGGGTTCAAGACCCTTGGAAAG
GCCTGTATACTTAGTTTGTGTACCATATTTTCTCTTTGTTCCTACTCCCT
CTCCCCGCTTTACTTCCGATACATTGTCCTGTTCTTTATCTAGATTTTTT
AGTTCAATTTTAATCACATGATTTTTTTTTTTTTCCCCCCCCCCCCTGTT
CCTTTTTTTTTTTTTATGTTCTTGGATTTTTTCCCCCCCAGAAAAGATAT
CTTCCCCTTTATGTGTTGAATAATTGCTTTGTACTTTTTTTATAAATCTT
AATATTTATCTTTTCCTGTTTATTCTTAAGCCCCCATTTTGTATAAGATA
GTATCCCTTTTAGTCGCTCTTTGTCTGTTCCTATATTCTCTATTTTTATT
TTACTTTTCTATCTTTCTTCCTTTCATCTCTTTTCCCTTATTTACCTGAA
CCTTTCCTATATTGGCTCTTTGGTTATCTTCTTCTCTATCGCCTCTACTT
ATACCCACTCTCTATATTTATCCTTCATATCTCTTATTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATACACTTATTTGGAATTGGTAACAGAACTGTTAAATAAGTGAGTAA
GCGCATTAAGGAAAAAGAAGAATGAAAATTCAGACTATCACTAAAGAGTG
GATTGTTTATGGGAACATCTAGGACTTAGAATTTTAGGAATCCCATAGCT
ACTATAAGGTCATAAAAGGTATGACTCTATGTCGTGAAATAGTAGTGACT
AATATGATGTGTCTTCTGATTGCTCTACTTCCTGTATTGTATTTGAAAAA
AAGAACAAATAAATTGTAATTATTTATTATCCAAAACATTTAGTAGCTCA
TATTTAATTACTGGAATTCAAAAATTGAAATCGGCAAAAGATAGACCACA
GTAAGATAGAAAATCTTCTGTCTGAGATTTCTATTCTCAATGGACAGGTG
AATTCAGTACAGATATACATACCTGGTTCAGTTGCTGAATATAAGAGACC
AATTGTTCATGTCTAACTGGAACATCTATATTAATCCTACCACCACTACT
TTGGCTCAGGAATTACTGGCGAATAGCACATCTATATACATCATATGCTG
AGGATGTTACTTATCGCTGTTTATTACTAAGCCCCTAGACGTTTCATGAT
TAATGCACTCCTTAATTTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_f14.g1 MSMg01no094_f14.g1 CHROMAT_FILE:
MSMg01no094_f14.g1 PHD_FILE: MSMg01no094_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:57 2005
         (319 letters)



>mm_chr19_13559126_13559843
          Length = 718

 Score =  586 bits (303), Expect = e-172
 Identities = 315/319 (98%), Gaps = 1/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacacttatttggaattggtaacagaactgttaaataagtgagtaagcgcattaaggaa 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct: 201 atacacttatttggaattggtaacagaactgttaaataagtgagaaag-gaattaaggaa 259

                                                                       
Query: 61  aaagaagaatgaaaattcagactatcactaaagagtggattgtttatgggaacatctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagaagaatgaaaattcagactatcactaaagagtggattgtttatgggaacatctagg 319

                                                                       
Query: 121 acttagaattttaggaatcccatagctactataaggtcataaaaggtatgactctatgtc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acttagatttttaggaatcccatagctactataaggtcataaaaggtatgactctatgtc 379

                                                                       
Query: 181 gtgaaatagtagtgactaatatgatgtgtcttctgattgctctacttcctgtattgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgaaatagtagtgactaatatgatgtgtcttctgattgctctacttcctgtattgtatt 439

                                                                       
Query: 241 tgaaaaaaagaacaaataaattgtaattatttattatccaaaacatttagtagctcatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgaaaaaaagaacaaataaattgtaattatttattatccaaaacatttagtagctcatat 499

                              
Query: 301 ttaattactggaattcaaa 319
           |||||||||||||||||||
Sbjct: 500 ttaattactggaattcaaa 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)