Query= MSMg01no095_c23.b1 MSMg01no095_c23.b1 CHROMAT_FILE:
MSMg01no095_c23.b1 PHD_FILE: MSMg01no095_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:07 2005
(584 letters)
>mm_chr19_18707544_18708527
Length = 984
Score = 1015 bits (525), Expect = 0.0
Identities = 556/567 (98%), Gaps = 4/567 (0%)
Strand = Plus / Plus
Query: 18 tctctgttcagagtgaaatagatcgaatataaacataagccaactatgaagaagatttaa 77
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 218 tctctgttcagagtggaatagattgaatataaacataagccaactatgaagaagatttaa 277
Query: 78 catttcactgggattaaatcaaagatagttttaaacaattctgcatatgagccagtcttg 137
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 278 catttcactgggattaaatcaaagatagttttaaacaattctgcgtatgagccagtcttg 337
Query: 138 gtgaggcttgcctatgatcccagtacttttaggaaggtagctttgccacagaggcagccg 197
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gcgaggcttgcctatgatcccagtacttttaggaaggtagctttgccacagaggcagccg 397
Query: 198 tggctgtgtggcaagttcctgaccagcctagactctgcatagtgagattctgtctcaaca 257
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 398 tggctgtgtggcaagttcctgaccagcctggactctgcatagtgagattctgtctcaaca 457
Query: 258 gataaataatattaacaaataagaatgataagtaagtgtgaaaaagataaatggctcatt 317
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gataaataatat-aacaaataagaatgataagtaagtgtgaaaaagataaatggctcatt 516
Query: 318 taaggtttgctcctctcccatcttgttcttctccctctctgtggaaaggatactagcggc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 taaggtttgctcctctcccatcttgttcttctccctctctgtggaaaggatactagcggc 576
Query: 378 cgaggagaagacactgcataaatatcccacaggattcaaggtgacaggataccctgacgt 437
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 577 c-a--agaagacactgcataaatatcccacaggattcaagctgacaggataccctgactt 633
Query: 438 caagactctgaaaggtccaaaaggtggtctctccagagacattaagatgtacagtttgtc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caagactctgaaaggtccaaaaggtggtctctccagagacattaagatgtacagtttgtc 693
Query: 498 ttggctctgagttgtgtgtgcttcacaacatctctgctgcaagccaggtgtacagacaca 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttggctctgagttgtgtgtgcttcacaacatctctgctgcaagccaggtgtacagacaca 753
Query: 558 cacctgcaatcccaccactctgtggca 584
|||||||||||||||||||||||||||
Sbjct: 754 cacctgcaatcccaccactctgtggca 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_c23.g1 MSMg01no095_c23.g1 CHROMAT_FILE:
MSMg01no095_c23.g1 PHD_FILE: MSMg01no095_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:07 2005
(290 letters)
>mm_chr19_18802519_18803208
Length = 690
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Minus
Query: 1 ccaaagactcccaaatgtgagtatttaaatcatgttcgggaccagtcatgactgcaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccaaagactcccaaatgtgagtatttaaatcatgttcgggaccagtcatgactgcaacat 429
Query: 61 ctttctgtcttggattaaaaggtgaaatgaaatgtgcagatgaaaataaaaacaattaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctttctgtcttggattaaaaggtgaaatgaaatgtgcagatgaaaataaaaacaattaga 369
Query: 121 taagtagaaagataaatgcaactctattaagctcatcttaggcgttaagggggaatgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 taagtagaaagataaatgcaactctattaagctcatcttaggcgttaagggggaatgtgt 309
Query: 181 attatccatgtgaatgtgtaatgtttgttcatttctcagcgttttgtagagaacttttag 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 308 attatccatgtgaatgtgtaatgtttgttcatttctcagcattttgtagagaacttttag 249
Query: 241 gctcatgcatgagagatagttgtctagttttggaatcagagatactgg 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gctcatgcatgagagatagttgtctagttttggaatcagagatactgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
