BAC Information

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BAC

Clone NameMSMg01-097H20
Chromosome19 (Build37)
Map Location 13,443,915 - 13,444,203
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467
Downstream geneOlfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097H20.T7 (MSMg01no097_h20.b1)MSMg01-097H20.TJ (MSMg01no097_h20.g1)
ACCAG313906AG313907
length708712
length of high quality
(start - end)
289 (70 - 358)512 (74 - 585)
definitionCHROMAT_FILE: MSMg01no097_h20.b1 PHD_FILE: MSMg01no097_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:14 2005CHROMAT_FILE: MSMg01no097_h20.g1 PHD_FILE: MSMg01no097_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGCTGTTCCTTCTTCATAGCTTCTATATATTTGCTTTCCATTATG
AGAAATTAGAACAAAAGATTACCAATAAGGAAAGTGTCATCACCTAACCC
ATTGAAAACTTGATTTAGGACCTGTAAACCTCTAAACCAAAGAAATAAAT
GTATGATGTCTACATGTGATATTCTCAAAATGCCTTTTCATTGGAAATAT
CAACCGTTACACTATAAGTGATACTCAAGAAAACATTTTCTCACATTAGA
CAGCATAACATGCCTGCCTATTTCTGATCTTCTCTGTGCGAGTGAAAATG
AAATAAGGCATTTGTATTGACACCCCACCACGTGGATAAATGACATGAAT
ATTTTGAAGTTAGTCTGGAAGGAAAATTTAACTCTTCTGGCAATGCTGGT
GAGGCTGCATAATCCTGTCCAATTCTAAAAGTGGCTGATGTGAAAACCAA
AGCGATCTCGCGAGTTAGCACAGAATGTTTTTAGGTTAAACTTCCATTTG
AGCATTCTGGGCTACTTAGAAAACTTGGTGTACATAATGGAGTGCCTGTC
ATCTAATCACTCAGAACCCAGACTAAAACATTATGTGTATCTCTATAAAC
AAAAGAGACTTTTGTAACAGTTCATCTTATCATCATTGTACTAAAAAGCT
TCCTTTTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCAGCACAGGGGAAATTTTCCTGAAGA
GAAAAAACGGTGTCTCAGATTCTAAGATCAACAATTGACAAATGGGACCT
CATGAAACGGAAAATAACGTGTACGGCAAAGGACACCTGTTAATAGGACA
AAACAGCAACCTACACATTGGTAAAAGATCTTTACCAATGCTACATGTGT
TAGAGGGCTAACATAAAATATATACAAATAACCAAAGAAGCTAGACTCCA
GAGGGCTAAGTAGCCCTAATTAAAAATGTGGTACAAACTAAGCAAAGAAT
TCTCAACTGAGGAATCTCTAATGATCAAGAAGCATGCGAAGAAATGTTCA
ACATCCTTAATTATCAGGAAAATGGAAATCAAAACGACCATGACCTTCCA
CCTCACACCAATCAGAATGACTAAGATGAAAACACAAAACAAAACAAAAC
AAAACAAAAAACAAACAAACAAAAAAAAAAACTAAGACAACATCAGATGC
TGGCAAGGATGTGGAGAAATAGGAACACCCCTCCATTGCTGGTGAGATTA
CATGCTGGTAAAACCACTTCTGATATCAATCTGGAAGTTCTTCAGAAAAT
TGGACATTGGGCTACCATCTCACCCAGCTATACCACTCCCTGGCATATCC
CCAAAATATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_h20.b1 MSMg01no097_h20.b1 CHROMAT_FILE:
MSMg01no097_h20.b1 PHD_FILE: MSMg01no097_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:14 2005
         (289 letters)



>mm_chr19_13443715_13444403
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagcttctatatatttgctttccattatgagaaattagaacaaaagattaccaataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 catagcttctatatatttgctttccattatgagaaattagaacaaaagattaccaataag 430

                                                                       
Query: 61  gaaagtgtcatcacctaacccattgaaaacttgatttaggacctgtaaacctctaaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaagtgtcatcacctaacccattgaaaacttgatttaggacctgtaaacctctaaacca 370

                                                                       
Query: 121 aagaaataaatgtatgatgtctacatgtgatattctcaaaatgccttttcattggaaata 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aagaaataaatgtatgatatctacatgtgatattctcaaaatgccttttcattggaaata 310

                                                                       
Query: 181 tcaaccgttacactataagtgatactcaagaaaacattttctcacattagacagcataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcaaccgttacactataagtgatactcaagaaaacattttctcacattagacagcataac 250

                                                            
Query: 241 atgcctgcctatttctgatcttctctgtgcgagtgaaaatgaaataagg 289
           ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 249 atgcctgcctatttctgatcttctctgtgagagtgaaaatgaaataagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)