BAC Information

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BAC

Clone NameMSMg01-098I08
Chromosome19 (Build37)
Map Location 14,397,933 - 14,398,086
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
Downstream geneEG667433, Tle4, EG433225, EG635497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098I08.T7 (MSMg01no098_i08.b1)MSMg01-098I08.TJ (MSMg01no098_i08.g1)
ACCAG314680AG314681
length708693
length of high quality
(start - end)
154 (425 - 578)---
definitionCHROMAT_FILE: MSMg01no098_i08.b1 PHD_FILE: MSMg01no098_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:40 2005CHROMAT_FILE: MSMg01no098_i08.g1 PHD_FILE: MSMg01no098_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGAATTTCCAGATCAATTTTGAAATTATCTGCGTTATCAAGTTGAGT
AATGAAGAAGCCATTTGTCTTATGTGTCTCTGTAACTCACAGGAAGTGAC
TAGGGGTCCAAGAAAACAAGTCCATCGGGTGTCTAATGAAAGATAAAATT
CTGTACAGGTAAGTGAAGAAATATTATAACCAAATCCAAGGTAATTAAAT
TTGGATTTGAAATAAAGCTACATGGTCTCAGCATTCAGATAAAGTGAAGA
TACCCTCATATACAAAAAGCACATCCACTGTACCATTTCCTTATAACAAT
CACTCCTTTCAGTTTGCGGTGACTGTTATTTATCACAAAGAACATTAAAA
AGCACATGATACAGGTAAAAGGTACTGGAATATACCAGAATGAACGTTAA
CAGAATCCCTTGAGATTCTTGTATTCCCAGCCACCTTTGAAGGTGAACAG
CAATGAGAGTTAGCACCACCAGTACTTTGAAACAGAGCCCTCTTTTAACA
TAAATGCAGATTGATTTCATTTGAATGGTCAGGTAGCAAAATTTCCATTT
CCAACACTGCGACATGTGCCTGGGCGTGAGCGGAGGAAAAATAACCGCGG
CTTTCACGCGTGGTTTCCATACTGTTTGCTATCCTTTCTGTGCCGTCTGT
TCTTCCAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXGTTATTCACCCATGTAGACCAAATCAGCAAGTCCAGTGAGA
TGCCATAAGCTGGCTGCATTGCACGATGGTGTGCAAATCCACTGAAGCTG
CTGACAAATAAGAGATCATTTCTTAAGATAGAAAGTGACTATCCATAGAG
ATCAACTCGAGGGGGGGAGACACTCTTTGTTGGGCGCGGAAGGAATAATG
GATATAGAGAGGGCCTTGAACTTCTGTTAGTTACTCATCGGGATGGTTCT
GACAACATAGAAAGTCAGAGGGAAAAAACACGTTTGCACATCACAAAACA
CCACTTATACGTCTGGCAGGGTTACCCAGAGAGGCACAGAGAATTGGCTT
TATAAACTGACTCTGTGGCAGTTGTTGTCCCTAGATAATGCTGAGAGCTT
ATCCCTTCCCCAGTACTGCGCTTATAACAGTATATTTTTCTTATCTCTGT
GACCGAACCCCCGGGGCACACAATTTATCCTAGGATATCTGCCTTGGGGC
GTAGAGGGCCTGACGAATTGTTCGGCCCGCCCCTTGCTCCCTGCCACCGA
GCCGGCTCACCCCGCCGAAAAGGCATGGACATAGGATCGGCTCCCTTTGC
CGACTGCTGAAAGCCCCCTTTCCCCCCTGCCTTCTGAGCGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_i08.b1 MSMg01no098_i08.b1 CHROMAT_FILE:
MSMg01no098_i08.b1 PHD_FILE: MSMg01no098_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:40 2005
         (154 letters)



>mm_chr19_14397733_14398286
          Length = 554

 Score =  282 bits (146), Expect = 5e-81
 Identities = 152/154 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggaatataccagaatgaacgttaacagaatcccttgagattcttgtattcccagccac 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaatagaccagaatgaacgttaacagaatcccttgagattcttgtattcccagccac 260

                                                                       
Query: 61  ctttgaaggtgaacagcaatgagagttagcaccaccagtactttgaaacagagccctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgaaggtgaacagcaatgagagttagcaccaccagtactttgaaacagagccctctt 320

                                             
Query: 121 ttaacataaatgcagattgatttcatttgaatgg 154
           ||||||||||||||| ||||||||||||||||||
Sbjct: 321 ttaacataaatgcagtttgatttcatttgaatgg 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)