Query= MSMg01no098_n24.b1 MSMg01no098_n24.b1 CHROMAT_FILE:
MSMg01no098_n24.b1 PHD_FILE: MSMg01no098_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:07 2005
(450 letters)
>mm_chr19_25539814_25540663
Length = 850
Score = 781 bits (404), Expect = 0.0
Identities = 437/450 (97%), Gaps = 4/450 (0%)
Strand = Plus / Plus
Query: 1 tgaagctgttgtttgtttgtttacaaacaggatgtctctgtgtcatgctggctgtcttgg 60
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 tgaagctg----ttgtttgtttacaaacaggatttctctgtgtcatgctggctgtcttgg 260
Query: 61 aaatccctttgtagaccaggctgctctcaagttcagagatctgcctgcctctgccttctg 120
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatctctttgtagaccaggctgttctcaagttcagagatctgcctgcctctgccttctg 320
Query: 121 agtgctggggctaaaggccatcgctgctggttattaataaaagctggcttataaataaaa 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgctggggttaaaggccatcgctgctggttattaataaaagctggcttataaataaaa 380
Query: 181 gaaataatattggattgtttttagcactctaactgctaatctaatacctggggtgccatt 240
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 381 gaaataatattggattgtttttaacactctaactactaatctaatacctggggtgccatt 440
Query: 241 ttactgcactatactgtcttatttataaaaatgagggatcgagaactgggtattgtggca 300
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 441 ttactgcactatactgtcttattaataaaaatgagggatcgagaacagggtattgtggca 500
Query: 301 cacacctttaatcccagcactctggaagcaaagacaagctgatctcttgagtttgagggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacacctttaatcccagcactctggaagcaaagacaagctgatctcttgagtttgagggc 560
Query: 361 agtttggtctatagagaaacttccaggacagtcaaatagccaggactacagagaaaccct 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttggtctatagagcaacttccaggacagtcaaatagccaggactacagagaaaccct 620
Query: 421 gtcttgtaaaacaaaacaaaacaaaacaaa 450
||||||||||||||||||||||||||||||
Sbjct: 621 gtcttgtaaaacaaaacaaaacaaaacaaa 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_n24.g1 MSMg01no098_n24.g1 CHROMAT_FILE:
MSMg01no098_n24.g1 PHD_FILE: MSMg01no098_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:07 2005
(466 letters)
>mm_chr19_25620488_25621349
Length = 862
Score = 828 bits (428), Expect = 0.0
Identities = 455/466 (97%), Gaps = 4/466 (0%)
Strand = Plus / Minus
Query: 1 cagaaaacggagggctcaggcgatgactctaagccctaagcaaccaagagcctgcgcatt 60
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 662 cagaaaacggagggcttacgcgatgagtctaagccctaagcaaccaagagcctgcgcatt 603
Query: 61 tataggggatccgccccacagccgaggttcaactgcagagacaggccgatcttggtgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tataggggatccgccccacagccgaggttcaactgcagagacaggccgatcttggtgagt 543
Query: 121 ttgaggccagtctgggatgacttgagtattagtattttcaaaaagaaaaacaggagaacc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 542 ttgaggccagtctgggatgacttgagaattagtattttcaaaaagaaaaacaggagaacc 483
Query: 181 ttgatgaacagggtttgttgggagatgactgccacccaggaagctgcacctaacatattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttgatgaacagggtttgttgggagatgactgccacccaggaagctgcacctaacatattc 423
Query: 241 taagctaccccaaggtagagcaggctggaggaggtggggcctcagatatatctaactctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taagctaccccaaggtagagcaggctggaggaggtggggcctcagatatatctaactctg 363
Query: 301 ggcagctgggtatttctgcaaaatgacaatgtgagaaaaaccaaaactgaaaatgaaccc 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 362 ggcagctgggtatttctgcaaaatgacaatgtgagaaaaaccaaagctgaaaatgaaccc 303
Query: 361 taaaaaacatacacaattccttcctgagtccctgcagcccatctttgctgacattaacag 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taaaaaccatacacaattccttcctgagtccctgcagcccatctttgctgacattaacag 243
Query: 421 atagaaagataggccagtgtgcatcacatcatactgtgattacgtg 466
|| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 242 at----agataggccagtgtgcatcacatcatactgtgactacgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 862
Length adjustment: 10
Effective length of query: 456
Effective length of database: 852
Effective search space: 388512
Effective search space used: 388512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
