BAC Information

Click to search

BAC

Clone NameMSMg01-099D04
Chromosome19 (Build37)
Map Location 29,694,690 - 29,695,162
singlet/doubletsinglet
Overlap geneD19Wsu12e
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik
Downstream geneMlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099D04.T7 (MSMg01no099_d04.b1)MSMg01-099D04.TJ (MSMg01no099_d04.g1)
ACCAG315190AG315191
length707706
length of high quality
(start - end)
321 (69 - 389)473 (76 - 548)
definitionCHROMAT_FILE: MSMg01no099_d04.b1 PHD_FILE: MSMg01no099_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:34 2005CHROMAT_FILE: MSMg01no099_d04.g1 PHD_FILE: MSMg01no099_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATACAACTGTTGTCCAGGGCTAAGATTAGGAGAAATGGGAACAAC
TGTTGTCTACAAAAGACAGCTGTGAGCTACTGACATGTCTCCACCCTGGC
CTACTGCAGGCAGTCCCTTATTTCAGGTGGCAGGTCCCCTGGAGGGATGT
AACTACTCCTTCTCAGGTTCCCAGGCACCATCCTTTTTCACAAGGAGCTG
CCACAGGCTTCTGAGATGTCTCCATCCCGGCCTGCTGCGGGTAGTCCCTG
TCATGGTATGCTGTCCCCAGTATCCCTTCAATAGAGTTTCTGATCCATTC
AATGTTAGTGTCTGTTACTCTTAATCAAATACCTTTAGAATCAATCCCAT
ATGTGTTAGTCAGTTTATTCCAATATACATTGAAAAAAGAAAATCTTGTG
ATTCTCTTGGCTTGCAAGTCTTTTTCTATCCACCCAGAATCTGCCTCTTT
CCCTCTGATAGAGACGGCAACCCTGGAGTTTATGACAAATGGAGACACCC
CTTTCGAGGCCACTGCTCATATGCACTTGTATCAGAGTTTCAAGCAAAAG
AAAGTTAGCAGATGGGAGGTGGGACTTCCTTCATTATGAAGGGCAGATCA
CGTACTGACTCCGGACAAGTGTGTTCAAACATTCATTCCCAGCCTGAGTC
CATAGCC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCCACTGATCATGTGGAAGGGA
AAATAATGAAGCTGTGAAACTGGAGATCAGGAACGCCCCAAGGCATGGCT
GTGCTTGAATCCATAACAAGATCAAAGTGCACTATCACAGGTAAATCTTA
CCCGGAAGGCTTTGGGAAGGCACACCTCTTGGAATATTAATTACAACTGA
GTATGATGGTAGTATGTACCTGTGAAGACAGCACTTCTGAGCCCTAGGGC
AGGCTGGTGTAGACAGAGAGCTGTAGGTTATGTTGAGACAAGGTAATATA
GCGAGAACAATGCTAACCCTCTAAAACTACAAACCGTATTTCCTTTTGTT
ACTATGTGAAGCGCGACTGTGACTCTGAGCTGTTGTTAGTACTGTTCTCT
TGCCTTACTTATTCACATGTTACAGGTTAAAGACAGCTGCCTCTTGATGG
AATGAGTTGCTCCATGGTAACAGAACACTGAACTATAATCTTTATCTCAG
AACACGTCTTGTAGTCATCGAGGCTTTATTAAATATGCCTCACCAAACAG
CTAGCATTCTTGTTAAGTGAGAAGCTATCCCCCTTTCTGGAGTTATCCCT
CGCTGGCTATCCATTGTTATACTGCCAGGCTGAGAGCCCAAATAGGTCTG
ATAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_d04.g1 MSMg01no099_d04.g1 CHROMAT_FILE:
MSMg01no099_d04.g1 PHD_FILE: MSMg01no099_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:34 2005
         (473 letters)



>mm_chr19_29694490_29695362
          Length = 873

 Score =  868 bits (449), Expect = 0.0
 Identities = 467/473 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttccactgatcatgtggaagggaaaataatgaagctgtgaaactggagatcaggaacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctttccactgatcatgtggaagggaaaataatgaagctgtgaaactggagatcaggaacg 614

                                                                       
Query: 61  ccccaaggcatggctgtgcttgaatccataacaagatcaaagtgcactatcacaggtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccccaaggcatggctgtgcttgaatccataacaagatcaaagtgcactatcacaggtaaa 554

                                                                       
Query: 121 tcttacccggaaggctttgggaaggcacacctcttggaatattaattacaactgagtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcttacccggaaggctttgggaaggcacacctcttggaatattaattacaactgagtatg 494

                                                                       
Query: 181 atggtagtatgtacctgtgaagacagcacttctgagccctagggcaggctggtgtagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atggtagtatgtacctgtgaagacagcacttctgagccctagggcaggctggtgtagaca 434

                                                                       
Query: 241 gagagctgtaggttatgttgagacaaggtaatatagcgagaacaatgctaaccctctaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gagagctgtaggttatgttgagacaaggtaatatagcgagaacaatgctaaccctctaaa 374

                                                                       
Query: 301 actacaaaccgtatttccttttgttactatgtgaagcgcgactgtgactctgagctgttg 360
           |||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct: 373 actacaaaccgtatttccttttgtcactatgtgaagtgggactgtgactctgagctgttg 314

                                                                       
Query: 361 ttagtactgttctcttgccttacttattcacatgttacaggttaaagacagctgcctctt 420
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttagtactgttctcttggtttacttattcacatgttacaggttaaagacagctgcctctt 254

                                                                
Query: 421 gatggaatgagttgctccatggtaacagaacactgaactataatctttatctc 473
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gatgcaatgagttgctccatggtaacagaacactgaactataatctttatctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)