BAC Information

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BAC

Clone NameMSMg01-099E05
Chromosome19 (Build37)
Map Location 12,359,461 - 12,360,045
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433
Downstream geneOlfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099E05.T7 (MSMg01no099_e05.b1)MSMg01-099E05.TJ (MSMg01no099_e05.g1)
ACCAG315240AG315241
length1,540707
length of high quality
(start - end)		---585 (77 - 661)
definitionCHROMAT_FILE: MSMg01no099_e05.b1 PHD_FILE: MSMg01no099_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:39 2005CHROMAT_FILE: MSMg01no099_e05.g1 PHD_FILE: MSMg01no099_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACACTATAACTACTCACAGTACCGCTCGCAAATCAATATAATAATATTA
ACTCAAAAATAGAAATATACAATCACTTAAACAACCGACGATTTGACAAA
ATCACGCGAATAGGGAACAAATATGTTGTTTATGTCCCCTCTTATAACAC
CGAGAAAAGAAACGAGANAGACACACACCGACCTGACCCCTAACGTATAT
TTTTACGCAACTCGTTCATATTTCTCATCCCCACCTCTCGATGTTTCTCG
CGTGTNCCCTCTAACTAAACCCCGCGAATATCGCGGCGCCCTCGGATTCG
GCGGCGTAATGCATAATTCGAATAACGAGCATAGGTGCGAAATTGGGGGG
TGTGCGTTGTAGCGCCTGGCAATGTGAGATATCTCGACACTTACATGAAT
TGAAAAATCGATATATAATGGATCCTTAATGCTTTCCGCGGCGCCGGATT
TCGTTAAATCCACGCGCAGATATTAAGAACGACGAGAAGCGACGCGATTT
AGTATCACCGCCTATGATACATCGAGCACGCTGTATTAATACATTCTGGC
GAAGTATCGTATAAGTCGGCCGTACATCACGTATAGATAGCGACCCACAC
GCCTATACACCACCACGTTAGCGGTTACGTGTCCGACTCATATAAATTGC
ACGCCGACGGCCGCGCCACATAACAATTCTTACGCCGCCGCGTGTATACG
TATGTGTGTTAAACGGAACCAACGCCGCCGCGCACAAACACAGATGTCTA
TGGTGAGTGATCGCCGCACAAAACGAAGGCGGCACGTAAAAAAAATACAC
GCGACGTACCCCCACACCTATTATGTGAGGCAGTTGAATAACAGGGGCAG
GAGATACGCAAGATGATCGATGATAAATGCGCGCGCTTACATTAGCGCAT
ATTGCACGTGCCGTGGCAATTGCTTTAACATATATAGCGGACAATCCAGC
CCAGTAAGTTAGAGATGCTACACGTAGCGAGTTGTGAGAAGAGTAATGGG
AGAGGGATGGGAGCACACACGGGATGCAGTTAAGAGAGTGTACAGATACA
TTAATGGCATATCGCGCCGACACATCTTGTAGATTAGATAGCATAACCCG
ACGCTGTTTCGGCAGCATGCTGAACGCGCCGTTACAGCAATATCGAATAT
ATTGGTAGGATCGAACAGTGCGAATATAATAATAAGTGTCGTGATACCGC
GCTTAGACATACATGACGCGCTCGCGTTATTGATTCCGATGCACATCATA
CTACCAACTGATATATAGGAANTNACTGTAATATCGACCGATTACATATA
TACACCGCGTTAGAAAAGGCGCACACATTCAGCTATGACATACACGATCG
TGAACGTATACTCCGCTCGATTGACGCATATCCTACAATTATACTCGCGC
ACGGCTTGACTATATCTGTCGAATACAGACGGCACGGTTTATCGCTTATA
TTATGTATGTTGCGCGCGTACATACACGTATATATATAATATAGGACGAG
ACGCAGTCGGTGTCCGCACTATAGCACGGTATAATGTATA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCACTCCAGCATATTTGACCAAC
AAGCAACTGCCCTCCTGGGGAGTTTCAGCCCCTAGTCGATCATGCACATC
CTATGTATTCAGGGAGTAAAACAAACCAACCACATGTGGTCTTATATGAA
ACTGGGAGTGGGGAGGAAGGACTGATGAATATAATCTCAGGCAAGGGTGT
TGTGATGCCATGTTTCAAGAAGAGAGTTTGTTTGCATGGATTTGTTTGTG
ACATTGTCTCCCTCTGTAACCTAGGCTGAAATGACTTTGTAGCGAAGGTT
GCCGTAAAGCCCATGGAAATCCTATGCCTTATTAAAGCTGGAATTATAGG
GGTAAATCACTACTCTTGACTCTACAGTCAATATTAACATTCTATCACTT
TCATTTCCATGGACATGCTTATCTCTGTACTATTATAATATTTAGCTCCC
ATGGCTGTGAACCAAGGTAGTCCGTAAGGCACGTCTGCTTCATGATGGTG
AAGCTCATGTCTACCTGGAGAAAACAGTTCCAATGCAATACTGAGAAATA
TCAACTTAAAGTTTAAGTTATTCTATTATGACCATTACATCACTTTTTAC
AAATGACATAATACTAGAACAAAATACTGAACATGCCTAGACGATAATAT
AGAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_e05.g1 MSMg01no099_e05.g1 CHROMAT_FILE:
MSMg01no099_e05.g1 PHD_FILE: MSMg01no099_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:39 2005
         (585 letters)



>mm_chr19_12359261_12360245
          Length = 985

 Score = 1069 bits (553), Expect = 0.0
 Identities = 577/585 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcactccagcatatttgaccaacaagcaactgccctcctggggagtttcagcccctagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttcactccagcatatttgaccaacaagcaactgccctcctggggagtttcagcccctagt 726

                                                                       
Query: 61  cgatcatgcacatcctatgtattcagggagtaaaacaaaccaaccacatgtggtcttata 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 caatcatgcacatcctatgtattcagggagtaaaacaaaccaaccacatgtggtcttata 666

                                                                       
Query: 121 tgaaactgggagtggggaggaaggactgatgaatataatctcaggcaagggtgttgtgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgaaactgggagtggggaggaaggactgatgaatataatctcaggcaagggtgttgtgat 606

                                                                       
Query: 181 gccatgtttcaagaagagagtttgtttgcatggatttgtttgtgacattgtctccctctg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 605 gccatgtttcaagaagagagtttgtttgcatagatttgtttgtgacattgtctccctctg 546

                                                                       
Query: 241 taacctaggctgaaatgactttgtagcgaaggttgccgtaaagcccatggaaatcctatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taacctaggctgaaatgactttgtagcgaaggttgccgtaaagcccatggaaatcctatg 486

                                                                       
Query: 301 ccttattaaagctggaattataggggtaaatcactactcttgactctacagtcaatatta 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ccctattaaagctggaattataggggtaaatcactactcttgactctacagtcaatatta 426

                                                                       
Query: 361 acattctatcactttcatttccatggacatgcttatctctgtactattataatatttagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 acattctatcactttcatttccatggacatgcttatctctgtactattataatatttagc 366

                                                                       
Query: 421 tcccatggctgtgaaccaaggtagtccgtaaggcacgtctgcttcatgatggtgaagctc 480
           |||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct: 365 tcccatggctgtgaaccaaggtagtctgtaaggcacttctgcttcatgatgatgaagctc 306

                                                                       
Query: 481 atgtctacctggagaaaacagttccaatgcaatactgagaaatatcaacttaaagtttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atgtctacctggagaaaacagttccaatgcaatactgagaaatatcaacttaaagtttaa 246

                                                        
Query: 541 gttattctattatgaccattacatcactttttacaaatgacataa 585
           ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 245 gttattctactatgaccattacatcactttttaaaaatgacataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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