Query= MSMg01no100_d12.b1 MSMg01no100_d12.b1 CHROMAT_FILE:
MSMg01no100_d12.b1 PHD_FILE: MSMg01no100_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:01 2005
(227 letters)
>mm_chr19_17437136_17437761
Length = 626
Score = 217 bits (112), Expect = 5e-61
Identities = 218/302 (72%), Gaps = 76/302 (25%)
Strand = Plus / Plus
Query: 1 cacagtcaaggggtccttagggagaatttcttgttagacctgctctttgccttgtgcaca 60
|||| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 126 cacaatcaaggagttcttagggagaatttcttattagacctgctctttgccttgtgcaca 185
Query: 61 caaaaactaaagttccttgttttgttttgttt---------------------------- 92
||||||||||||||||||||||||||||||||
Sbjct: 186 caaaaactaaagttccttgttttgttttgttttgttttgttttgttttgttttgtttggc 245
Query: 93 ------------------------------------------ggcttggtttggtttggt 110
||||||||||||||||||
Sbjct: 246 ttggcttggcttggcttggcttggcttggcttggcttggcttggcttggtttggtttggt 305
Query: 111 ttggttt-----ttaaaaaagaacaggtcttcttcgccctattcctggctagctttgagc 165
||||||| || |||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 306 ttggtttggttttttaaaaagaacaggtcttcttcgccctattcccagctggctttgagc 365
Query: 166 tcattatgtagctcaagttgatttaaggcctacaagtccctagcctttggcttcctgggt 225
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcattatgtagctcaagtt-atttaaggcctacaagtccctagcctttggcttcctgggt 424
Query: 226 gc 227
||
Sbjct: 425 gc 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 626
Length adjustment: 9
Effective length of query: 218
Effective length of database: 617
Effective search space: 134506
Effective search space used: 134506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no100_d12.g1 MSMg01no100_d12.g1 CHROMAT_FILE:
MSMg01no100_d12.g1 PHD_FILE: MSMg01no100_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:01 2005
(479 letters)
>mm_chr19_17530974_17531852
Length = 879
Score = 507 bits (262), Expect = e-148
Identities = 298/310 (96%), Gaps = 2/310 (0%)
Strand = Plus / Minus
Query: 171 accaaagcattttagttttatgaaggcctacttgtcagttgtcagccttaattactaggc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 accaaagcattttagttttatgaaggcctacttgtcagttgtcagccttaattactaggc 820
Query: 231 aaatgaagccctattctgtaagtcctttcctgaacctgtgtcttgtaagccattgtctgt 290
|||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||
Sbjct: 819 aaatgaagccctattctgaaaatcctttcctgaacctgtgtcttgtaagccattgcctgt 760
Query: 291 tttcttctataagttccagtgtttctagtttcacagtgaggtctttgatggcacct-ggt 349
||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |||
Sbjct: 759 tttcttctataagttccagtgtttctagtttcacactgaggtctttgatgg-agtttggt 701
Query: 350 cattaggagttgatttttatgacattgaaactttgtgcacctaaaatgtgcaagccattt 409
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 700 catcaggagttgatttttatgacattgaaactttgtgcacctaaaatgtttaagccattt 641
Query: 410 cagcacaaatccaagatcatatactcaggccaccatgtgtggcctcctgtcccaaagtac 469
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 640 cagcacaaatccaagatcatatactcaggccaccaagtgtggcctcctgtcccaaagtac 581
Query: 470 agattgtgag 479
||||||||||
Sbjct: 580 agattgtgag 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|