Query= MSMg01no100_f23.b1 MSMg01no100_f23.b1 CHROMAT_FILE:
MSMg01no100_f23.b1 PHD_FILE: MSMg01no100_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:12 2005
(469 letters)
>mm_chr19_20134902_20135770
Length = 869
Score = 899 bits (465), Expect = 0.0
Identities = 468/469 (99%)
Strand = Plus / Plus
Query: 1 gccacaagatctccatgccaagatccaggtcagaaacttctatctcccagactccagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccacaagatctccatgccaagatccaggtcagaaacttctatctcccagactccagatt 260
Query: 61 aggatcactggtgagccttccaattctggattgtagttcattccacatatagtcaaggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggatcactggtgagccttccaattctggattgtagttcattccacatatagtcaaggtg 320
Query: 121 acaaccaggaatagccactgcagtaacaaattaaatattatccacttatacatgtaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaccaggaatagccactgcagtaacaaattaaatattatccacttatacatgtaggag 380
Query: 181 gtcatgaattactagtcaattaattaataactgcattggatttgtgtaaaaagagcattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatgaattactagtcaattaattaataactgcattggatttgtgtaaaaagagcattt 440
Query: 241 tgtttctaaaatatgtaaaacctaagagtaaacttgataaagcagaagtgacaaaagcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttctaaaatatgtaaaacctaagagtaaacttgataaagcagaagtgacaaaagcta 500
Query: 301 tagcacatgtggtagtaatttattttatgttaacttttctatgaatattagatttttaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcacatgtggtagtaatttattttatgttaacttttctatgaatattagatttttaat 560
Query: 361 tttaaaatactttaaatgaaaattgaaagtatgagattttgatttgtacttatttagatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaaatactttaaatgaaaattgaaagtatgagattttgatttgtacttatttagatt 620
Query: 421 tatgtcctgctctataatacatttaataagtaaagcctttcgtttttca 469
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 tatgtcctgctctataatacatttaataagtaaagccttttgtttttca 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_f23.g1 MSMg01no100_f23.g1 CHROMAT_FILE:
MSMg01no100_f23.g1 PHD_FILE: MSMg01no100_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:13 2005
(513 letters)
>mm_chr19_20291735_20292648
Length = 914
Score = 847 bits (438), Expect = 0.0
Identities = 444/446 (99%), Gaps = 1/446 (0%)
Strand = Plus / Minus
Query: 1 caacttgtgttaaaaatggtaagtactgtgggattagtgaatttatgctttcatacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caacttgtgttaaaaatggtaagtactgtgggattagtgaatttatgctttcatacagca 387
Query: 61 tggacttctctattttagtttttaagctgtgtctcatggtgtgttcctatcacaagctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggacttctctattttagtttttaagctgtgtctcatggtgtgttcctatcacaagctgt 327
Query: 121 acttctctgaactggaaagcttcaagtaagctgtcaacacatttatatcctttaagtcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acttctctgaactggaaagcttcaagtaagctgtcaacacatttatatcctttaagtcat 267
Query: 181 gttcctttactggactatgatgctgctaatagcagttttaaaaggaagaaac-aaaaaaa 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 gttcctttactggactatgatgctgctaatagcagttttaaaaggaagaaacaaaaaaaa 207
Query: 240 gacaagggaagaaagaaaggtaggagtaagaaggaaggaagaaaaggatgaagccaggaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gacaagggaagaaagaaaggtaggagtaagaaggaaggaagaaaaggatgaagccaggaa 147
Query: 300 gtgagggaaagaaagtagaggcactggcaacatctgaattgctgcagcaggttattcctt 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gcgagggaaagaaagtagaggcactggcaacatctgaattgctgcagcaggttattcctt 87
Query: 360 ttaaggtataataaagagtaactgagaattatatttgtttggcatctgtcaatagttcac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ttaaggtataataaagagtaactgagaattatatttgtttggcatctgtcaatagttcac 27
Query: 420 ggtatcaatattggaagaatttaata 445
||||||||||||||||||||||||||
Sbjct: 26 ggtatcaatattggaagaatttaata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
