BAC Information

Click to search

BAC

Clone NameMSMg01-101I04
Chromosome19 (Build37)
Map Location 13,417,793 - 13,418,165
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466
Downstream geneOlfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I04.T7 (MSMg01no101_i04.b1)MSMg01-101I04.TJ (MSMg01no101_i04.g1)
ACCAG316904AG316905
length728815
length of high quality
(start - end)
376 (22 - 397)186 (130 - 315)
definitionCHROMAT_FILE: MSMg01no101_i04.b1 PHD_FILE: MSMg01no101_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:45 2005CHROMAT_FILE: MSMg01no101_i04.g1 PHD_FILE: MSMg01no101_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTATATTCAGAGAGATCCGCGGAATTCTGTGTAGTATCCTCTACTAT
AAATCAATCTGTTGTTCTGACCTCTACTCAGAATTAAAATGTTCATATTA
GATAAATGGTCTCAGATAATAAATCTAAATGAAGAATTTATTGCCTCAAA
AACCCTAAGAGGACACATATGAGTCATGAAACTTTTGTTTTATAAGAAAG
GCTCAATAAATAATTTATCCTTTGTCTTAGATGAACTATGTCCATATGCC
CCATACAATTGTGCTTCTAGTAAATACATTTATATTGAAGACTACTTTAT
TTATCTTGAATTGACTTTCTACATCTGGTCATTATATGTCTTACTTGTAA
TTCTACTGAGGTTTCTATATTTTGGTCACTAAGTATATTTAGCATAATAT
CCTGATGTAGTGGGACTGTGCATAATTTTAAATGTGGGAAATATTAAGTT
CCTTAAGATATATCGGCTCAAGCACAAAAAGCTGACACTGCAGCTAAACA
GGTACTTTGTGGCAGCTTTATCAGTTAAATTCAACATAATCTTCCCTTAA
TACTTATTGGACTCGTAGGGTAAAAATGTCACGCAACATACCCGTTAACT
CATATATTGGCATAATTAGTTGATACCTCAGTGGAATGTATCCCATATCT
CCAAAGAGTCCGCTTATATTCTGAGCGCTACTTCTCAACACCTCCACATC
TACAATCTCTTTTCTTTATTGTCCTTGT
NNNNNNNNNNNNNNNNNNTTTTTTNTTTTCTTCTCNCNCNCCTTTTTTTN
NNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCACAA
TTTTTTGAAGGAGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTT
TATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATC
CTTTCCAAATCTGCTGGTGGCCTTTTTGTCTTATTGACGATGTCTTTTGC
CTTACAGAAGCTTTGCCGCTTTATGAGGCCCCATTTTTCAATTCTCGATC
TTACAAGCACAAGCCATTGCTGTTCTATTCATTATTTTTTCCACTGAGCC
CATATCCTTGAGGTTTTTCCCAACTTTCTCCTCTATATGTTTTCAGTGTT
TCTTGGTTCTTTGTGGCGTTTCCTCGTTTCATTATATCTTGACCCCAGCA
CAAGCGCAGAAAGGATCGGCACCACTATCTAATCTCATTCACTATAGTAA
ACCTCATACCAATTTTGTTACATTTATTTATTGCTATAACAGGCGCGAAT
ATAAATTTCGCTCGATGTGTTTATTTTTTTCTCCTCTTTTTAATATTTTT
ATTGATTATTAATCTTATGTGATTATTTTTTTTAATTAACTCTTTTTCAA
CATATACTTCATTATAATACCCCTACTCTCTTTTTAATCATTATTCTTCA
TAATCTCTCCCTTTTTACTTTTTTTTTTTGTTCTTCCCCCTTCCCCCGCC
GGCTCCCCCCTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i04.b1 MSMg01no101_i04.b1 CHROMAT_FILE:
MSMg01no101_i04.b1 PHD_FILE: MSMg01no101_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:45 2005
         (376 letters)



>mm_chr19_13417590_13418365
          Length = 776

 Score =  698 bits (361), Expect = 0.0
 Identities = 370/373 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctgtgtagtatcctctactataaatcaatctgttgttctgacctctactcagaat 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgtgtagtatattctactataaatcaatctgttgttctgacctctactcagaat 263

                                                                       
Query: 64  taaaatgttcatattagataaatggtctcagataataaatctaaatgaagaatttattgc 123
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 taaaatgttcatattagataaatggtctcagaaaataaatctaaatgaagaatttattgc 323

                                                                       
Query: 124 ctcaaaaaccctaagaggacacatatgagtcatgaaacttttgttttataagaaaggctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcaaaaaccctaagaggacacatatgagtcatgaaacttttgttttataagaaaggctc 383

                                                                       
Query: 184 aataaataatttatcctttgtcttagatgaactatgtccatatgccccatacaattgtgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataaataatttatcctttgtcttagatgaactatgtccatatgccccatacaattgtgc 443

                                                                       
Query: 244 ttctagtaaatacatttatattgaagactactttatttatcttgaattgactttctacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttctagtaaatacatttatattgaagactactttatttatcttgaattgactttctacat 503

                                                                       
Query: 304 ctggtcattatatgtcttacttgtaattctactgaggtttctatattttggtcactaagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctggtcattatatgtcttacttgtaattctactgaggtttctatattttggtcactaagt 563

                        
Query: 364 atatttagcataa 376
           |||||||||||||
Sbjct: 564 atatttagcataa 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)