BAC Information

Click to search

BAC

Clone NameMSMg01-102I07
Chromosome19 (Build37)
Map Location 18,454,499 - 18,454,752
singlet/doubletsinglet
Overlap genenone
Upstream geneRfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102I07.T7 (MSMg01no102_i07.b1)MSMg01-102I07.TJ (MSMg01no102_i07.g1)
ACCAG317639AG317640
length739710
length of high quality
(start - end)
254 (87 - 340)146 (73 - 218)
definitionCHROMAT_FILE: MSMg01no102_i07.b1 PHD_FILE: MSMg01no102_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:08 2005CHROMAT_FILE: MSMg01no102_i07.g1 PHD_FILE: MSMg01no102_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGGGGTGANNGTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCTTGGGAACTGTCGATAGAATTATTAGGAAG
AGTTACAGACTTTCATGCAGGGCTGCAAAATTGGCAGAGTCTAATCCTGG
TGCTGCCTGTAGCAATGTTCTTAACTGGATGAAGGGATGATATAGATATA
AAGTCGAACATAAGAGAATCAATTGAGCGGTGAAAGAAGACAGTGTCAAC
GAGAACATCTTAAGTCCCTATTCTAACCAGAACTGAACTTGACTTAGAGA
CAAGGAAAAAGCAATACACAAAGGAAAGAGTTCAGCTTGGTGTATGGTTC
CAGAGTGAGAGGCTGGAATGGCAGGTGAGGTATGGCAGCAGACAGCACGA
ATGTCATAGCTGACAGATTGATCATATCTCAACCTTACCCACGTAGTACA
GACAGTGTACATGAAATGTCCCGAGGTTACCAACTTCTAAACCTATCCTT
AGCTTCGTATTTCCTCAGCGATGTATTTCCTCCCCAAGGCTGCACCTAGT
TACATTAACCTCCTCTATTAGCATGACTAGTCGAGTATTCCCTTATTTTT
TTTCCTTGTCCCCTATTCTTCCCTTTTTCTTCCCAATTTTTCATAATTCC
TTCCCCCCCGTTTTCTACTCATCTCTGCGCTGCTCGCCTCCCACCTCACC
TTCCTTCCAATTTCCCACTCGTTTTCATATCTCCTGCAC
AATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAATCATAATGTCTAAGATCAA
AAATTCATGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGCAGTGCAGGCTTGTACAATCACTCTGGAAATTC
CGTCTGGTATTTCCTCATATTTTTGTACCTAGAACTACCGTAGGACCCAC
AAATACCTCTCCTGTCTACTTCTCCAGAATATGTTTCAATTGGTCTAAAT
GATATATGCCCCATTACGTCCACACCTCTCTTATTTATTATATCCAGATT
CTTATATGACCCCCTATTCCCCTTTCTCCATCTCTCGTTAATTTATATTG
TGTTAAATCTCTTCTCCCATACTTCCCTTCCTTTCCTACTTCTCCACTCT
ATTATTACCCCTATATCTATCTATCTCCACTATGAAAGACATATACCCCC
CCTATTGCCTCTCTTCTTCCTCTCATACTCTCACACCTCCCCCCCTCTTT
TCACTATCTACCTTTATTTTTCCTCCCCATTATTCCCTTCTCCTCTCATT
CTTTCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_i07.b1 MSMg01no102_i07.b1 CHROMAT_FILE:
MSMg01no102_i07.b1 PHD_FILE: MSMg01no102_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:08 2005
         (254 letters)



>mm_chr19_18454299_18454952
          Length = 654

 Score =  476 bits (246), Expect = e-139
 Identities = 252/254 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattattaggaagagttacagactttcatgcagggctgcaaaattggcagagtctaatc 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 454 gaattattaggaagagttacagactttcatgcaaggctgcaaaattggcagagtctaatc 395

                                                                       
Query: 61  ctggtgctgcctgtagcaatgttcttaactggatgaagggatgatatagatataaagtcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctggtgctgcctgtagcaatgttcttaactggatgaagggatgatatagatataaagtcg 335

                                                                       
Query: 121 aacataagagaatcaattgagcggtgaaagaagacagtgtcaacgagaacatcttaagtc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aacataagagaatcaattgagtggtgaaagaagacagtgtcaacgagaacatcttaagtc 275

                                                                       
Query: 181 cctattctaaccagaactgaacttgacttagagacaaggaaaaagcaatacacaaaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cctattctaaccagaactgaacttgacttagagacaaggaaaaagcaatacacaaaggaa 215

                         
Query: 241 agagttcagcttgg 254
           ||||||||||||||
Sbjct: 214 agagttcagcttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)