BAC Information

Click to search

BAC

Clone NameMSMg01-104H03
Chromosome19 (Build37)
Map Location 43,829,765 - 43,830,305
singlet/doubletsinglet
Overlap geneCutc
Upstream geneHps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15
Downstream geneAbcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104H03.T7 (MSMg01no104_h03.b1)MSMg01-104H03.TJ (MSMg01no104_h03.g1)
ACCAG319057AG319058
length7041,485
length of high quality
(start - end)
544 (47 - 590)---
definitionCHROMAT_FILE: MSMg01no104_h03.b1 PHD_FILE: MSMg01no104_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:42 2005CHROMAT_FILE: MSMg01no104_h03.g1 PHD_FILE: MSMg01no104_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAGTGTCACTTCTGCTGTAGCCTCCCACGTGCAAAGCTTTTGA
GGTCAGTTCATAGGATTCATTTTCAGACTCTCAAAAGGTTGCCAGCCATC
ATGTATCATCTAGTTTTCCTTACCTCCTCTTTCTGCATTCACAGCAGACT
CCACCGAATCTACACACACTTCCATAAGAAATCCATTTCCTGCTCCTAAA
ATATATGAACAGACATTCTTGAAGGAACTAGCAATTCATACAAATCTCCC
ATAAATACTTCATAATTTTGCTGCCTGAATTCACATGTGCAATAGAATAA
TAAATTGATGCACTAAGGCCCATCTATGTGGTAAAATGTCATTCATTAAA
ATTGGCATCTCTAGACTATGAAATAGATATACAGACACACACATAAGAAA
CCAAACTGAAACCATCTTTACTACACAGTAAATGGGACACTAATCTCCCT
AACGCACAGACCTTATCTCCATGTATCCCTGCTCAGACTCTCAGAGTGTT
TCTCAATGCCAGGCGTTATAAAAAACGAGAATTGGATTTCAAACCCTGGT
CCCACTACTTTATTCCCTGTGTGACCCCAGACAAGTTACTTACGTTTTCT
ATAAAACAAGAGTGAGCTTCAGTTCCTATCTCAGGGTACTGAACACTGAG
ATAA
NNNTTTTTTTTTTTTTTTTNNTNNNNNNNNNTTTNNNNNTNTNNNNNTNT
NNTNNCTNCCCTTTTTCCNNTTTCNTTNNNTCTTNCCCCCNNNNTTNTNN
NNNNNNTTNNTTNTTTTNTNCTNNNNNNNNNNNTTTTTTTCNTTCTTCTT
CTTTNNNNNCCCTTTTTTTTNNNNTTTNNNNNNCTNNNTNNNNNCTNNNT
NNNNTANNNNNNNTTTTTTTTCTNNTTTTCTTNNTTTNCTTTTTNTTNTT
TNNTTTTNCTCTCATATTATAATAACNNTATACTCTCCCTTCCTCTCCTC
ACCTCTATATCTCTCCTACTCCTATCATTCTCCTCTNTTATCCCTCTCTC
ATCACTCCTTTATCTCATTCTTCCCCCTCCTCACTTATCCTACTCTCTTC
CTCTCTATTTCACNTTATATTACCCTCTTATTCCTCCTTCCTTCTCTCTT
CTCTTATNCTTCTCNNCTCCTCTCTCATCCCTCTCTTCGGCNCACCACTA
ATACATACTATGCTATTATAATACCTCTACGCATCAACTAATGTTCAATC
ANCGATGATCTAGTCGNCTATCTTATCTTCTCANATGTACCCACACAATC
ATCNCCCGTTACTCACACTCCTCTGCNCCCACACCGCTCTCCACTCACGC
NATGCGCGTNCTACATCTCCACTAACCTACTTCTCTCCGCCCGCGCTCTA
TCCCTATCCTCGTACGATCATCGCGATTATACTGTTCGCCCGCTCCTCTC
TTCTCGCNCGCCCGCTGTNTACTCGTTCATTCCTGCTCTCCATCCTCTCC
TCTCANNTCTCGCCTTCCTCTCGTACGTTTGCTCTATCATCTCTTCCTCA
CCTCGTATACCGTTATCCTCTCNTCTCTACTAGCTATCTTCTCNTCCNCT
CCGTNTCATTTCCTCTCGTCTCTTCCTCTCCTCCTCTCTCTTCTCGTACA
TGGCGTCATCTCGCATTTTTCTCTCTCTTACTCATCGTATCATCCCCCNC
ACTCCTCACGCGTACCTCATCGACAACTGAGTGCATGAGAGACTGACTGC
CGGCGCGCCAGGGTCCGCCGACGACAGAACGAGAGGTGNAGGTACGCGGT
GCGAGATGACAGTACGTGTCACAACATAGATGACGCTGGCTGGACGTGAG
AGAAGACGGAGCGAGGCTGCGGNCTGATAGATCACCGTGCGCCGACGCGA
ACGACAACAACTGAGTATGCGCGCTGTGTCGCGGGATGTAGCGTGATGAC
GGCTATGGCGGNGCGTGGNGAAGGCGAGGAGATGTGGAGTAGCGCAGGGG
GAGTGCTGAGGAGATAACGGGAAGTGCGCGCGAGTGCACGGCGTGATGAG
CAGAGNGGCCGTATGGCCCGCGCGCGTAGTGAGCGCGCGNAGNCGCACCG
ATGAATGTAGCGCATGAGATATCGGCCCAGCGCGAGAAGGTGCCGCGCGC
GCGCGTGCGTGTGNACGCGCGNGATGTCGTGCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_h03.b1 MSMg01no104_h03.b1 CHROMAT_FILE:
MSMg01no104_h03.b1 PHD_FILE: MSMg01no104_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:42 2005
         (544 letters)



>mm_chr19_43829562_43830505
          Length = 944

 Score =  953 bits (493), Expect = 0.0
 Identities = 529/541 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatagtgtcacttctgctgtagcctcccacgtgcaaagcttttgaggtcagttc 63
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ggaactcatagtggcacttctgctgtagcctcccacgtgcaaagcttttgaggtcagttc 685

                                                                       
Query: 64  ataggattcattttcagactctcaaaaggttgccagccatcatgtatcatctagttttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataggattcattttcagactctcaaaaggttgccagccatcatgtatcatctagttttcc 625

                                                                       
Query: 124 ttacctcctctttctgcattcacagcagactccaccgaatctacacacacttccataaga 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 ttacctcctctttctgcattcacagcggactccaccgaatctacacacacttccataaga 565

                                                                       
Query: 184 aatccatttcctgctcctaaaatatatgaacagacattcttgaaggaactagcaattcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 564 aatccatttcctgctcctaaaatatatgaacagacattcttgaaggaactagcaattaat 505

                                                                       
Query: 244 acaaatctcccataaatacttcataattttgctgcctgaattcacatgtgcaatagaata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acaaatctcccataaatacttcataattttgctgcctgaattcacatgtgcaatagaata 445

                                                                       
Query: 304 ataaattgatgcactaaggcccatctatgtggtaaaatgtcattcattaaaattggcatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 444 ataaattgatgcactaaggcccatctatgtggtaaaatgtcattcattaaaattgacatc 385

                                                                       
Query: 364 tctagactatgaaatagatatacagacacacacataagaaaccaaactgaaaccatcttt 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctagaccatgaaatagatatacagacacacacataagaaaccaaactgaaaccatcttt 325

                                                                       
Query: 424 actacacagtaaatgggacactaatctccctaacgcacagaccttatctccatgtatccc 483
           |||||||||||||||||||||||||||||||||| || |||||| ||| || ||||||||
Sbjct: 324 actacacagtaaatgggacactaatctccctaacacagagacctcatccccgtgtatccc 265

                                                                       
Query: 484 tgctcagactctcagagtgtttctcaatgccaggcgttataaaaaacgagaattggattt 543
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agctcagactctcagagtgtttctcaatgccaggcgttataaaaaacgagaattggattt 205

            
Query: 544 c 544
           |
Sbjct: 204 c 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)