Query= MSMg01no105_k22.b1 MSMg01no105_k22.b1 CHROMAT_FILE:
MSMg01no105_k22.b1 PHD_FILE: MSMg01no105_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:23 2005
(481 letters)
>mm_chr19_26010303_26011185
Length = 883
Score = 768 bits (397), Expect = 0.0
Identities = 456/481 (94%), Gaps = 16/481 (3%)
Strand = Plus / Plus
Query: 5 aattctaccagtcattt-ccatctaatttgaaaa-tttcctgagtcttgagg-agaaggg 61
||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||
Sbjct: 205 aattctaccagtcatttgacatctaatttgaaaattttcctgagtcttgaggta-aaggg 263
Query: 62 agttgatggcatggagagtcacgagctgtacatcgctgtacatctggacctttctgtact 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttgatggcatggagagtcacgagctgtacatcgctgtacatctggacctttctgtact 323
Query: 122 tgagttcacctccttaacagaagcagagcaaggtttgcttccccgccaccccacaagctt 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 tgagttcacctccttaacagaagcagagcaaggtttgcttccccgccaccccacaaactt 383
Query: 182 tcagtaggtgcgttcggctaatgcttttctgcagccttcccttacaaaatcaaaggaagg 241
|||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 384 tcagtaggtgcgttcggctaatgctttt-------ctt---ttacaaaatcaaaggaagg 433
Query: 242 tgctgctgtgaatgtaatgaccccagaaagagacaggttccatagggagaaaa-ttctcc 300
||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||
Sbjct: 434 tgctgctgtgaatgtaatgactccagaaagagacaggttccataggaagaaaaatt-tcc 492
Query: 301 caaggcctggcaggcacttgctgcctggcttcattcatttaaggcttaagggtgtgggtg 360
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 493 caaggcctggcaggcagttgctgcctggcttcattcatttgaggcttaagggtgtgggtg 552
Query: 361 aagagctggcagtgttaacgacatcttcagatgattcccgcactgaagtccaggagttgg 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 553 aagagctggcagtgttaacgacttcttcagatgattcccgcactgaagtccaggagttgg 612
Query: 421 ctccatagactgagaacacatgagttcaaggcccgtttttgtcccatataaatgtgtatg 480
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 613 ctccgtagactgagaacacatgagttcaaggcctgtttttgtcccatataaatgtgtatg 672
Query: 481 t 481
|
Sbjct: 673 t 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 883
Length adjustment: 10
Effective length of query: 471
Effective length of database: 873
Effective search space: 411183
Effective search space used: 411183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_k22.g1 MSMg01no105_k22.g1 CHROMAT_FILE:
MSMg01no105_k22.g1 PHD_FILE: MSMg01no105_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:24 2005
(413 letters)
>mm_chr19_26118182_26118994
Length = 813
Score = 768 bits (397), Expect = 0.0
Identities = 409/413 (99%)
Strand = Plus / Minus
Query: 1 aagcacagctgaggacactgtcaccttgccacagtgccacattctgatttccgaccttgg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 613 aagcacagctgaggacactgtcaccttgccacagtgacacattctgatttctgaccttgg 554
Query: 61 aaagaaaaggctcttctcaggcccagactttcccaagaattcaacctctgtcccaactct 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaagaaaaagctcttctcaggcccagactttcccaagaattcaacctctgtcccaactct 494
Query: 121 caaccatgagggcacatggcagtatttctccctctgtctaaataagtactgaggtaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaccatgagggcacatggcagtatttctccctctgtctaaataagtactgaggtaaaga 434
Query: 181 aatgacaatgtgacaatgtgcagggaagggtcacaggatgtccaccccttgctgccagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aatgacaatgtgacaatgtgcagggaagggtcacaggatgtccaccccttgctgccagga 374
Query: 241 gcaccaagttgctatgtccagccacttgaaaaattattgttaactctcagctaaattaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcaccaagttgctatgtccagccacttgaaaaattattgttaactctcagctaaattaat 314
Query: 301 cataatcaaatcaaaatgacagtcagaactatgacagtgggcgctatctaagcaatggtc 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 cataatcaaatcaaaatgacagtcagaactatgacagtgggctctatctaagcaatggtc 254
Query: 361 actagcccaccaggatggacaacaaggtggtacaaccacaaataaatcccgca 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 actagcccaccaggatggacaacaaggtggtacaaccacaaataaatcccgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space: 324816
Effective search space used: 324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
