BAC Information

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BAC

Clone NameMSMg01-106A09
Chromosome19 (Build37)
Map Location 21,866,229 - 21,866,775
singlet/doubletsinglet
Overlap geneTmem2
Upstream geneTmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik
Downstream geneEG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106A09.T7 (MSMg01no106_a09.b1)MSMg01-106A09.TJ (MSMg01no106_a09.g1)
ACCAG320218AG320219
length7671,394
length of high quality
(start - end)
---558 (89 - 646)
definitionCHROMAT_FILE: MSMg01no106_a09.b1 PHD_FILE: MSMg01no106_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:52 2005CHROMAT_FILE: MSMg01no106_a09.g1 PHD_FILE: MSMg01no106_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATGGATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAATAG
GATCCGCGGAATTCTAGGATGCCCCCTAAGCTTCTGAACTGGCCTAGGGA
CAACTTGAGTCACTTTCCCAGCTGTAGCATTCTTAATGTGTCTTTTGATA
GACAGCATCTCTCAAACACTAAAGTGCATAAGAACCCCTCTGCCTTCTCT
GATATTGTGCCAGATCTGCCTCTGATTTTTATCACACTAAGTTACTGCCT
TCTTACCGCTCTCATGAGATGCCTTTTCTGTTGATCGTGTTATAATATTT
TTCCCTCTGCCTCCTATCCCCCCCACTTCTTCCCGCACTGAATGTCACTA
CTATATCCCATATCCCCTCCTCTTATCTCTCTTCATTATCTTCACCATTC
CCAGTTACGCCCATCTCCTCCTCCTCTCATCCGTCTCGCTCTCCTTTTTT
CCTATTTTTTTCTCTCCTCCCCCTTTGCCTTCCTTCCCTCCTCTCCTCTC
TTTCCTTCTTCCTTCCTTCTCCCACCCTCTTTTTCATCTCCTCCCCTTTT
ATCCTTTCCTCTCCTTTCTTTCCCCCTCCGTTTTTCTTTTCTATCTTCCT
CCCTCTTTCTTTCATCCCCTTTCCCCTCTCCTCTTTTCCCATTATCCTTC
TTATAACTTAGCTCCTTATTTCCTTTCTTCTCTATCTATTTCTCTTTCCC
ACTTATTTTATTTGCTCATACCGCGAATCTCATTTATTTACACCCTACCT
GCTGTACTTCACTGATG
CGCATATTTTCTTTCCATGGAGTCGTGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAGGCCTGTGCAGCAGCTC
CACACCATTAGCACACTCCTCCACTCCCACCTCAGCCTGACACTGACGGA
AAATACCAAGTCAGTTACATCCCCGATTCAGTTAACTGGGTGCCGCCACC
TTCAGTGTTAGGTTGTCTAGTTCTAAGGACACTGCCTCTCCACTCCACTC
CACTGCAGAGCACATAATCGCATCCTACAGCCTCCCAGGGCTCCCTGGCT
GCGCTCTAGAACAATTCAGTTAGGGTGGTGAGGCTGGGTCAAAGCTGCTG
GAAAATTAACATTCCCAAGGGACTCTAAAGAGCACCTGGAGCCACCTGCT
CATGCCAACTGTTCAGGTTTTTCAGAATGGAAAATAAGCATTAAAAAAAA
AAAAAAAAAAAAAAACCAAACCTGAGAGAAATGGAGATCCCTGGACTCTT
TTTTATGTGATTCAGGCCCAACTACTGCAAAGAGGACTCTGGATTTACAT
ATTTAAAACACACACTTTGAAAGGAAGAGGCAGATGGCGTATTACATTAT
AATCTCAAAAAGAAAAGAAAAATGTGTGTCTATAAAACACACTCTGGTGA
CACTGAAACAAGTGACCACACTTGGAGCCTCACAACCCTAAACTCTTTAA
ACTGAAATTACAAGTCCGTGTATCCCCATGAGAACCCAACAGATGCCCTA
GGAAGTTCAAACAGACAGGCATTCAAGTCTGGATGTTCAATTCCCCGGAT
GGTGTTATCCCGTGGTTTAGCAGTTTAACCATTTCTTCCCATAACCTTAC
TTAAATACTGACTCTGAATGCACTCATTATGAATGTTTAGCCTGGGGTGG
TGACCTTGAAAGGAATTATAATTTTTACCTGTGAATCCAGGAACGAATGT
TAAAAATCCCCAAAGACTGGTTTGGTGACTTTTAAAACCGGGTTTTTAAA
ATCTTACTTTAACCTTACCTAATAATGTCCCCGTGATAGGCCCATTCTCC
CTCCTTTTTCCCCACCCCTTGAAACTACAATATAAGGTGTCCATCCTGGC
TTTAATGCTTAATGGTACCAATCTTTGGTGAAATCGTGCTCAATTTTTCC
TCCTAACCCTCTTTCTTTTTTTTATATAAAACTCTCTATTCTTTCCGTCA
TCCTGGGTTTAATAACACATTCCTCCCCTTGTATAGAATAACTATTTCTT
GCTCCGAAATCATCCCTCTTCAATAAAATCTATCTTGAATTCTCTCNATG
GTGCAGAGGTGATTATACTCTATCATCATGATGAGTTNACTACTCATCAT
TCTGTATATGTGTAGTGTGGCTTATCTCTCCATCATCCTCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_a09.g1 MSMg01no106_a09.g1 CHROMAT_FILE:
MSMg01no106_a09.g1 PHD_FILE: MSMg01no106_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:52 2005
         (558 letters)



>mm_chr19_21866222_21867179
          Length = 958

 Score =  998 bits (516), Expect = 0.0
 Identities = 542/556 (97%), Gaps = 9/556 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcagcagctccacaccattagcacactcctccactcccacctcagcctgacactgacgga 62
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 554 gcagcagctccacaccattagcacacttctccactcccacctcagcctgacactgacaga 495

                                                                       
Query: 63  aaataccaagtcagttacatccccgattcagttaactgggtgccgccaccttcagtgtta 122
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaataccaagtcaattacatccccgattcagttaactgggtgccgccaccttcagtgtta 435

                                                                       
Query: 123 ggttgtctagttctaaggacactgcctctccactccactccactgcagagcacataatcg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggttgtctagttctaaggacactgcctctccactccactccactgcagagcacataatcg 375

                                                                       
Query: 183 catcctacagcctcccagggctccctggctgcgctctagaacaattcagttagggtggtg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catcctacagcctcccagggctccctggctgcgctctagaacaattcagttagggtggtg 315

                                                                       
Query: 243 aggctgggtcaaagctgctggaaaattaacattcccaagggactctaaagagcacctgga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aggctgggtcaaagctgctggaaaattaacattcccaagggactctaaagagcacctgga 255

                                                                       
Query: 303 gccacctgctcatgccaactgttcaggtttttcagaatggaaaataagcattaaaaaaaa 362
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 254 gccacctgctcatgccaactgttcagggttttcagaatggaaaataagcattaaaaaaaa 195

                                                                       
Query: 363 aaaaaaaaaaaaaaaccaaacctgagagaaatggagatccctggactcttttttatgtga 422
           |||||||         ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aaaaaaa---------caaacctgagagaaatggagatccctggactcttttttatgtga 144

                                                                       
Query: 423 ttcaggcccaactactgcaaagaggactctggatttacatatttaaaacacacactttga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ttcaggcccaactactgcaaagaggactctggatttacatatttaaaacacacactttga 84

                                                                       
Query: 483 aaggaagaggcagatggcgtattacattataatctcaaaaagaaaagaaaaatgtgtgtc 542
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  aaggaagaggcaaatggcgtattacattataatctcaaaaagaaaagaaaaatgtgtgtc 24

                           
Query: 543 tataaaacacactctg 558
           ||||||||||||||||
Sbjct: 23  tataaaacacactctg 8


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)