Query= MSMg01no106_k23.b1 MSMg01no106_k23.b1 CHROMAT_FILE:
MSMg01no106_k23.b1 PHD_FILE: MSMg01no106_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:29 2005
(498 letters)
>mm_chr19_26389868_26390765
Length = 898
Score = 890 bits (460), Expect = 0.0
Identities = 484/492 (98%)
Strand = Plus / Minus
Query: 6 gaattcacctgagttcgcggatctgaataaaggattttgtataggacactggccctgaat 65
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 697 gaattcacccgagtttgcggatctgaacaaaggattttgtataggacactggccctgaat 638
Query: 66 agtcttcaactacattctcactacaaaacaactaaagggaactattggggtgcagtatgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 637 agtcttcaactacattctcactacaaaacaactaaagggaactattggggtgcagtaggg 578
Query: 126 gtcaggaagcctttctcatttatacaaagaaatctcaaatttttgtaaatcctaacaggc 185
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtcaggaagcctttctcgtttatacaaagaaatctcaaatttttgtaaatcctaacaggc 518
Query: 186 ctgtaaaatgtgcatgtagacattcttaaataatactcaggcttctaagttttcctcttg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctgtaaaatgtgcatgtagacattcttaaataatactcaggcttctaagttttcctcttg 458
Query: 246 ctcaattttcctgaagagccatggatgctcacaactgcagtacttgatttgtaaatggga 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 457 ctcaattttcctgaagagccatggatgctcacaactgcagtacttgatttgtaagtggga 398
Query: 306 gagcaaaggatctttcagatctggagagattaggccacttggaataagtctatcacaatt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gagcaaaggatctttcagatctggagagattaggccacttggaataagtctatcacaatt 338
Query: 366 atctgcagccattagagcacacatatctgcagtgctttgttccatctctgagttttacct 425
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 337 atctgcagccattagagcacacatatctgcagtgctttgtttcatctctgagttttacct 278
Query: 426 ttctctcactccattcctctccccttcttttggttcttttatttcttagttcttggagtc 485
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 277 ttctctcactccattcctctccccttcttttagttcttttatttcttagttcttggagtc 218
Query: 486 agcattcattgg 497
||||||||||||
Sbjct: 217 agcattcattgg 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_k23.g1 MSMg01no106_k23.g1 CHROMAT_FILE:
MSMg01no106_k23.g1 PHD_FILE: MSMg01no106_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:29 2005
(699 letters)
>mm_chr19_26228021_26229120
Length = 1100
Score = 1299 bits (672), Expect = 0.0
Identities = 693/700 (99%), Gaps = 1/700 (0%)
Strand = Plus / Plus
Query: 1 gaccaggctgaccctgaactcagagatccacctgcctctgcctcccgggtgctgggatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaccaggctgaccctgaactcagagatccacctgcctctgcctcccgggtgctgggatta 260
Query: 61 aaggcgtgcaccaccactgcccggcttgtttggtccatttgagtatcctctatggtagag 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcgtgcgccaccactgcccggcttgtttggtccatttgagtatcctctatggtagag 320
Query: 121 agccttgtaatggttaatgtccatctttaatttgattccatttagaatcatccaagatat 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 agccttgtaatggttaatgtccatctttaacttgattccatttagaatcatccaagatat 380
Query: 181 tgaggcacatttctgagtgtgtctgggagggtatttccagagaagatgaactgaaatgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggcacatttctgagtgtgtctgggagggtatttccagagaagatgaactgaaatgct 440
Query: 241 gcaagaggtcctgattgttgaaagaactatttctgtggccgggacagagataaagtaaaa 300
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 441 gcaagaggtcctgattgttgaaagaactatttcagtggccaggacagagataaagtaaaa 500
Query: 301 gtagacaaagaaaaccaggagagagatggcatttctttgccttggcttccagctcttctg 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggacaaagaaaaccaggagagagatggcatttctttgccttggcttccagctcttctg 560
Query: 361 tgaagggaaaagtctccaccacacgtccccactgacacaacccttggtgtcccaccatgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagggaaaagtctccaccacacgtccccactgacacaacccttggtgtcccaccatgc 620
Query: 421 ctttcctgccttgatggagtgatgacctctgaaaccaggagccaaaataaatcttttctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcctgccttgatggagtgatgacctctgaaaccaggagccaaaataaatcttttctc 680
Query: 481 ccttaagttgtttctgtaatgtattttggttacagagacatgaaataactaatataatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttaagttgtttctgtaatgtattttggttacagagacatgaaataactaatataatcc 740
Query: 541 tgcttaggattccatctgcttttctattatgttttctacaattttttttcttactgactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 tgcttaggattccatctgcttttctattatgttttctacaattttttttcttattgactt 800
Query: 601 ataaattctttattctgattggaggttttagtagaaaatatgaagtcatacaggagtgta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataaattctttattctgattggaggttttagtagaaaatatgaagtcatacaggagtgta 860
Query: 661 atgaaatggttatta-ctccaatgttgttggtgtttttta 699
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 861 atgaaatggttattaactccaatgttgttggtgtttttta 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1100
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1090
Effective search space: 751010
Effective search space used: 751010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
