Query= MSMg01no108_c19.b1 MSMg01no108_c19.b1 CHROMAT_FILE:
MSMg01no108_c19.b1 PHD_FILE: MSMg01no108_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:56 2005
(574 letters)
>mm_chr19_43043084_43044056
Length = 973
Score = 1054 bits (545), Expect = 0.0
Identities = 566/573 (98%), Gaps = 1/573 (0%)
Strand = Plus / Plus
Query: 2 ggaattctttatcttttcctcaggatattgtaaaagtcagaaaatctagacagtcttaca 61
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctttatcttttcttcaggatattgtaaaagtcagaaaatctagacagtcttaca 261
Query: 62 tgtaaatgttattaattttttttaaaggaaaagaaacaaagatttaaacatacatttgca 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgtaaatgttattaattttttt-aaaggaaaagaaacaaagatttaaacatacatttgca 320
Query: 122 agggatttactcctccaaaatagtttctatcatctctgaaatagtaagtcttttaaaagc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggatttactcctccaaaatagtttctatcatctctgaaatagtaagtcttttaaaagc 380
Query: 182 tgtcttcaaaatcatataaaaataaccacaataaaactgacatgttcttataaaccgttt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcttcaaaatcatataaaaataaccacaataaaactgacatgttcttataaaccgttt 440
Query: 242 tcagcttcttatatgtgtaggtcacacattctccaagagagacaatcacggagattctcc 301
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgagcttcttatatgtgtaggtcacacattctccaagagagacaatcatggagattctcc 500
Query: 302 tacttaagcacagaggcctcatgttacaaggggtgtttgagttgttcaaatccacacagc 361
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 tacttaagcacagaggcctcatgttacaaggggtatttgagttgttcaaatccacacagc 560
Query: 362 cagtgtggaataaaaccaaagtctgattccaaatccaacccaatttctggaaccctgtga 421
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 cagtgtggactaaaaccaaagtctgattccaaatcgaacccaatttctggaaccctgtga 620
Query: 422 ggcctctaagctgttttcactagagctgagcagtatagtaaaactctaaaatgtaaaaga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcctctaagctgttttcactagagctgagcagtatagtaaaactctaaaatgtaaaaga 680
Query: 482 aaaagttgaaattttatgttgagagaatacacccatatttattagaaaacatatcaggct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaagttgaaattttatgttgagagaatacacccatatttattagaaaacatatcaggct 740
Query: 542 taaataccttctttacatttctgtttttttccc 574
|||||||||||||||||||||||||||||||||
Sbjct: 741 taaataccttctttacatttctgtttttttccc 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 973
Length adjustment: 10
Effective length of query: 564
Effective length of database: 963
Effective search space: 543132
Effective search space used: 543132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_c19.g1 MSMg01no108_c19.g1 CHROMAT_FILE:
MSMg01no108_c19.g1 PHD_FILE: MSMg01no108_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:56 2005
(455 letters)
>mm_chr19_43212210_43213065
Length = 856
Score = 818 bits (423), Expect = 0.0
Identities = 448/459 (97%), Gaps = 5/459 (1%)
Strand = Plus / Minus
Query: 2 cacccttagccaaaggctgttgtcagttgatggctgctgggagagagagagagtctgttt 61
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 792 cacccttagccaaaggctgttgtcagttgatgactgctgggagagagagagagtctgttt 733
Query: 62 tctttatgagttcatccctttgtagactgactatgctccagtggaaagccacatattcaa 121
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 732 tctttatgagttcatccctttgtagactgactatgctccagtggaaagccacgcattcaa 673
Query: 122 caatacatttttgggg-----ggggttcaagacagggtttctctgtgtccatgcatattt 176
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 672 caatacattttgggggggggaggggttcaagacagggtttctctgtgtccatgcatattt 613
Query: 177 tttaaagaaaacaaagttgggtgggtagggaaggggcagatctgggaagagttgtgggaa 236
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttaaagaacacaaagttgggtgggtagggaaggggcagatctgggaagagttgtgggaa 553
Query: 237 gaagctgaatatagttaaaaatatgtaattttaaaaactaagaataggtgtatacataat 296
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 552 gaagctgaatatagttaaaaatatgtaattttaaaaactaagaataggtgtgtacataat 493
Query: 297 catacacatgtatgcatacacatattttaagtggtaagtaaattgttcagtctttcaaat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 catacacatgtatgcatacacatattttaagtggtaagtaaattgttcagtctttcaaat 433
Query: 357 gcataacacaaatacttctctatataggtacatatacatattaatgtatatatctaaaat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcataacacaaatacttctctatataggtacatatacatattaatgtatatatctaaaat 373
Query: 417 aatcttcaactcattaatgcattgtggatactctaactt 455
|||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aatcttcaactcattaatgcattgtggatactctaactt 334
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space: 376470
Effective search space used: 376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
