BAC Information

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BAC

Clone NameMSMg01-109A18
Chromosome19 (Build37)
Map Location 19,927,554 - 19,927,846
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109A18.T7 (MSMg01no109_a18.b1)MSMg01-109A18.TJ (MSMg01no109_a18.g1)
ACCAG322328AG322329
length710728
length of high quality
(start - end)
615 (69 - 683)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no109_a18.b1 PHD_FILE: MSMg01no109_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:06 2005CHROMAT_FILE: MSMg01no109_a18.g1 PHD_FILE: MSMg01no109_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCCCAAATGCCCNNTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGCGGAATTCTTGCCTTTCATCTTAGTAAAAA
ATATGTTTTCTAAATATATATATATACATATATATATATATTCTTAAAGT
ATTAAAAGATATCTGAACAGTAGAAACCTTCAGAGTTAAAAACAAGCAAA
TAAAAAATTAACAAACATACCAAACTGACCGATTTGTAGAGGATAAGGGA
CTAGAGTCCTCAGTCCTGAATGTTATATCTATATAGTACCTCCTACTCTC
TCGACGTAGGAATGAACACAGAAAAGAGGACAGAAAGACTAAAATACCAT
GAGGTGTAACAGACATATCAGGCCAATATCTCTATCTCTATCTCTATCTC
TCTCTATCTCTCTCTCTATCTCCATCTCTATCATCTCTATCTATTTATCT
ATCTATCTATCTATCTATCTATCCATCTATCTATCTATCTATTATCTTAT
ATCAATAGCTTTGACTACATGCACAAGATATGAATAAGATCAAGCTCTAT
ATCTGTGTCTCTATATCTATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTTCCTACCTATCAATGGCTATGACTACATGCACAA
GATATGAATAAGATCAAGCCAGACTTAGTTCCAACTCTACAACAATGTTG
TCCCACTTAA
CCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTGTCAAAGATGTCTTCACTGAAA
CTGCACTGATCAATGTTTATACTTTCTAAATTTATTTTATTTAAGATAAA
GTGAAAATGTACAATATCTGGAACACTATGAACTCTTCAAATTTTATTTT
AATACTTTAAATGATATAATATTTAATTATAGAATTATTAAACCAAAAAT
ATAAGTAAACTGACTATAATAACAACTGCACCCTGTTTTCTCACCAACCA
TTCAGTAGGAGCAGAAATATGCTGTTTCATTAGAAACTTTCTCTCTTTAT
TAATAATAGTAAGCTACAGTTATAGGAACAAAATGGAAATTCTAACGATG
GAATTGGAAGGTAGGTAGGAGAGCTTAATGCACATATGTAGATATATGCA
CTAACATGTATACAAACATATATAATGAACCTAGATGATATAATCTAGAT
AAAATTGATATTATTTATAAGCTTCTATATAACATGCTGAGGATTTTTCC
CAATGCTTTGTCTTTGTATTTGCTCCCAAATCCTCAGGCAAATCTGCACG
TCCAGTTGCTGAAGATCCTTGACCCCAAATGGATTATATTTTAAATAATT
CATGGTTTATGTTTTGTTCCATTTTAACAAAGATTGTATTTATGGATTCC
CAAATTAAAAACTGCTGTCCAAACAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_a18.g1 MSMg01no109_a18.g1 CHROMAT_FILE:
MSMg01no109_a18.g1 PHD_FILE: MSMg01no109_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:06 2005
         (289 letters)



>mm_chr19_19927358_19928046
          Length = 689

 Score =  509 bits (263), Expect = e-148
 Identities = 284/293 (96%), Gaps = 4/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgtcaaagatgtcttcactgaaactgcactgat----caatgtttatactttctaaa 56
           ||||||||||||||||||||||| ||||||||||||    ||||||||||||||||||||
Sbjct: 197 ttttgtcaaagatgtcttcactggaactgcactgatcagacaatgtttatactttctaaa 256

                                                                       
Query: 57  tttattttatttaagataaagtgaaaatgtacaatatctggaacactatgaactcttcaa 116
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttactttatttaagataaagtgaaaatgtacaatatctggaacactatgaactcttcaa 316

                                                                       
Query: 117 attttattttaatactttaaatgatataatatttaattatagaattattaaaccaaaaat 176
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atcttattttaatactttaaatgatataatatttaattatagaattattaaaccaaaaat 376

                                                                       
Query: 177 ataagtaaactgactataataacaactgcaccctgttttctcaccaaccattcagtagga 236
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ataaataaactgactataataacaactgcaccctgttttctcaccaaccattcagtagga 436

                                                                
Query: 237 gcagaaatatgctgtttcattagaaactttctctctttattaataatagtaag 289
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcagaaatatgctggttcattagaaactttctctctttattaataatagtaag 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)