BAC Information

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BAC

Clone NameMSMg01-109B12
Chromosome19 (Build37)
Map Location 20,025,201 - 20,025,628
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109B12.T7 (MSMg01no109_b12.b1)MSMg01-109B12.TJ (MSMg01no109_b12.g1)
ACCAG322363AG322364
length760720
length of high quality
(start - end)
---427 (87 - 513)
definitionCHROMAT_FILE: MSMg01no109_b12.b1 PHD_FILE: MSMg01no109_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:10 2005CHROMAT_FILE: MSMg01no109_b12.g1 PHD_FILE: MSMg01no109_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCTCCCTATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAG
ATCCGCGGAATTCCCAAGATATCCCAGAGACAACTAACCTGGACCCTTAG
TGGCTCTCAGAGACTGAACCACCAACTAATGAACATACACAGGCTCGGAC
CTACCCCCACTCCAATCCCCTGTCCCCGCACATATATAGCACAAGCGCAG
CTAGATGATCATGTGCGTTCCCCAACAATCAGAGTCGGAGGTTGCTCCTA
AAGCTGTTGCTTGTCTGTGTCCACTATTCTCCTCACTGGACTGCTTTGTC
TGGCCTCAGTGTCATAGGATCTGCCTAGCCCTGAATAAATTTTATGTATC
TATGCGTGTGGTTGACGTTCCCGTTTTCCCCCACCTCCTCACAGATCATA
GCCGAGCGTCGCGCGTCGAACCCTTCTACTGTATTTACCGAAACCCCCTC
CTCCTCCCTTCCCCCTTTCCTTCTTCCCCCTTTTTCCTCCTCCTTTCCCT
CTTTTCCCCTCCTTCCCCAATTTCTTTTTTTTAATAATCACCTTCCTCTC
CTCTTACCATCCTTTACCTATTCTCCTTCCCCCTATTTTTCCTTTTCCCC
CCCCCCCCCCATTACCCCTTCCATCCCCTTTTTTCCCCTTTCATTTACCC
TCCCCTTTCCCCCTTTTTCCTTTTCCCACATTTCTTTTTTCCTCCTTTCT
CTTACCTATTACCCTTCTCCTTCCCTATCCCCTTTTTCGCCCCCCCCTTT
TCCTTTCCCC
NAAAGATTGNNNCCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATACCCACTGGCT
CCTGTGGCCACAAACCACAGTAGCAGTAAACAGAAAATTATGCAGGCAAA
GCATTCACATACATAAAATAAAAACAAAAATTTAAATTAAAATCAGGATG
GGTTATGAATGCTGTCAAAAACCAGGGAAATATTGTTTTAGATAGGAGTC
AAAGTGAAAGGTTTGTGTGAAGGTCATATTTCAGCGGCCAGTGTTATTCA
CTGGTATTTAATTAGTCAATTCATTAATTAACTTACTTGTCACTGTGATG
AAACTCCCAATAAAATCAACATAAAGGAAGAAAGAGTAGTTTGGGTTCCT
AATCTCAGAAGCTCTAGCCCATGGTCATGTGACCACCAACAATGGGAAGG
AATAAAGCTATTAATCATGTGTGCTGACTCGAAAGAGGAGGAAGAAAGAA
AGAAAAGAGCAGGGTTGGGCAGGAAAGACCGGAAAGAGATGGGCCAGAGA
GGAATGTTGAAGGAGAGAGAGAGAGACCGAGAGAGACAGAGACAGAGAGA
ACGAAGGAGAGACTCAGAGGCAGAGCAGAGACAGAGATTGTCTCCATATC
TCACAATTTGTTTAAATGGCTTTAAATGATCAAGTATGCTCCCTGGGTTC
CATGCCCTATAGTTCTTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_b12.g1 MSMg01no109_b12.g1 CHROMAT_FILE:
MSMg01no109_b12.g1 PHD_FILE: MSMg01no109_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:10 2005
         (427 letters)



>mm_chr19_20024909_20025736
          Length = 828

 Score =  750 bits (388), Expect = 0.0
 Identities = 418/428 (97%), Gaps = 1/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacccactggctcctgtggccacaaaccacagtagcagtaaacagaaaattatgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 catacccactggctcctgtggccacaaaccacagtagcagtaaacagaaaattatgcagg 661

                                                                       
Query: 61  caaagcattcacatacataaaataaaaacaaaaatttaaattaaaatcaggatgggttat 120
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 caaagcattcatgtacataaaataaaaacaaaaatttaaattaaaatcaggatgggttat 601

                                                                       
Query: 121 gaatgctgtcaaaaaccagggaaatattgttttagataggagtcaaagtgaaaggtttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gaatgctgtcaaaaaccagggaaatattgttttagataggagtcaaagtgaaaggtttgt 541

                                                                       
Query: 181 gtgaaggtcatatttcagcggccagtgttattcactggtatttaattagtcaattcatta 240
           || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 540 gtaaaggtcatatttcagcggccaatgttattcactggtatttaattagtcaattaatta 481

                                                                       
Query: 241 attaacttacttgtcactgtgatgaaactcccaataaaatcaacataaaggaagaaagag 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 480 attaacttacttgtcactgtgatgaaacttccaataaaatcaacataaaggaagaaagag 421

                                                                       
Query: 301 tagtttgggttcctaatctcagaagctctagcccatggtcatgtgaccacc-aacaatgg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 420 tagtttgggttcctaatctcagaagctctagcccatggtcatgtgaccacctagcaatgg 361

                                                                       
Query: 360 gaaggaataaagctattaatcatgtgtgctgactcgaaagaggaggaagaaagaaagaaa 419
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 360 caaggaataaagctattaatcatgtgtgctgactggaaagaggaggaagaaagaaagaaa 301

                   
Query: 420 agagcagg 427
           ||||||||
Sbjct: 300 agagcagg 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space:   342342
Effective search space used:   342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)