BAC Information

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BAC

Clone NameMSMg01-109J24
Chromosome19 (Build37)
Map Location 12,974,867 - 13,154,030
singlet/doubletdoublet
Overlap geneOlfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1
Upstream geneAV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446
Downstream geneOlfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109J24.T7 (MSMg01no109_j24.b1)MSMg01-109J24.TJ (MSMg01no109_j24.g1)
ACCAG322762AG322763
length729727
length of high quality
(start - end)
177 (85 - 261)244 (87 - 330)
definitionCHROMAT_FILE: MSMg01no109_j24.b1 PHD_FILE: MSMg01no109_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:55 2005CHROMAT_FILE: MSMg01no109_j24.g1 PHD_FILE: MSMg01no109_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(13,153,854 - 13,154,030)(12,974,867 - 12,975,110)
sequence
AATAAACNNTCTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAG
AGAATCCGCGGAATTCATTAATAATTTCCAATTATAGCATGTGTAACTCT
CCATATAACTAATATATCACATTTGGTATGGGGAAAGGTCTATTTTCTAC
ACAATTCCAACGTACTGATTATTGCTCAACCAAGCCATATGTTCACACTT
ATGCAATTCTACTTTATTTCAACTTCTTTATCATCACGTTTCTCTTTTCT
AAACGCTGTGAATATTCTAATGATTGAAAGATGACTCTGATGGCGAATAA
TACAAAAGTAACAGACCTTCTCCTGCCAGGACTCATTAATGACCAATGAT
TACCGCTTCCACTCTTCACGAATTTTCTTTTCATCCATACCATTGACTGC
CTGAAACACCTTCAAATCCTTCTGCTTATTTGTCCTAAACACTTGTTTCC
TCATTCCCCTGTCCTTTTTCCCCATTATCTCCTCTTGGCCCACTTCCGTT
CATTCCCAATTGTTTTTCTCTATAAACATGCCTACCCATTTCCTTCTTAA
CCTTACCTCATTCCCCCATATTACCTTTTCCCCCCCCCACCCTTTTCCCT
TCATCCCCTTTTCCCCCGTCTTTACCTCTCCCGACGCCCTCCTTCCTTTA
CCACTTTTCTTATTTCCTTTTCCCTACCATTTATCCATTACCCCCCTTCC
ACTTTTTACCCTCTCCTTATCCTTACCCN
ACCCCCAGAACCATGAAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCGAAAAACTTGGATATATTGTCGAAGAC
ATACCAGTAATGTAGTGAAGTGAACACATAAAATTAAGCACCATAAATAT
CCACTTTAAACACACCTTTCTATAAAATTCACCATACTCACACGCATATT
ATGAACACCTCCATGCATTTCTCCGTTCATGGTATTCATTTTAAATTGCT
TTGTGTGTATTTGAATTGATATGTAATAGGAAAAATACATGTAGTTAAGT
GATAGATAAGTAATCTTAATGGGATTTTGATTTTTTTAAACTATTGTTAT
CATCCAAGTATACAATTCTGTATAAAATATTTTCCAAGAATTTTGAAAGA
AGTAAGGATATCATTTTATCTACTTGAATTTATTGTGGACTTCAACACTA
ATTTAGTACAGGGAGGAGATCTGAGAAGAATCAAATTATAAACATCACCA
TACAAAATTAAATTAAACCCATTTTTTTTCCTTTTAGGAAATGAATTCAT
TCTTTATCCTTAATAATGTAGTATCAATTTTATAAATGCATTCTTCACCT
CCTTGTTCCTCAGGCTGTAGACTAGAGGATTCAGCATAGGAATGACCATG
GTGTAGAATACAGATGTTACTTTGTCTGTGTCCATGGAATGATTGGAGCT
GGGCTGTAAATACATGAAAATGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_j24.b1 MSMg01no109_j24.b1 CHROMAT_FILE:
MSMg01no109_j24.b1 PHD_FILE: MSMg01no109_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:55 2005
         (177 letters)



>mm_chr19_13153654_13154230
          Length = 577

 Score =  311 bits (161), Expect = 1e-89
 Identities = 173/177 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcatgtgtaactctccatataactaatatatcacatttggtatggggaaaggtctatt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tagcatgtgtaactctctatataactaatatatcacatttggtatggggaaaggtctatt 318

                                                                       
Query: 61  ttctacacaattccaacgtactgattattgctcaaccaagccatatgttcacacttatgc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 317 ttctacacaattccaacgtactgattattgctcaaccaagtcatatgttcacacttatgc 258

                                                                    
Query: 121 aattctactttatttcaacttctttatcatcacgtttctcttttctaaacgctgtga 177
           |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 257 aattctactttatttcaacttctttatcattatgtttctcttttctaaacgctgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no109_j24.g1 MSMg01no109_j24.g1 CHROMAT_FILE:
MSMg01no109_j24.g1 PHD_FILE: MSMg01no109_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:55 2005
         (244 letters)



>mm_chr19_12974667_12975310
          Length = 644

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattgtcgaagacataccagtaatgtagtgaagtgaacacataaaattaagcaccataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 atattgtcgaagacataccagtaatgtagtgaagtgaacacataaaattaagcactataa 260

                                                                       
Query: 61  atatccactttaaacacacctttctataaaattcaccatactcacacgcatattatgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 atatccactttaaacacacctttctataaaattcaccatactcacacacatattatgaac 320

                                                                       
Query: 121 acctccatgcatttctccgttcatggtattcattttaaattgctttgtgtgtatttgaat 180
           |||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 321 accttcatgcatttctctgttcatggtatttatttgaaattgctttgtgtgtatttgaat 380

                                                                       
Query: 181 tgatatgtaataggaaaaatacatgtagttaagtgatagataagtaatcttaatgggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatatgtaataggaaaaatacatgtagttaagtgatagataagtaatcttaatgggatt 440

               
Query: 241 ttga 244
           ||||
Sbjct: 441 ttga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)