BAC Information

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BAC

Clone NameMSMg01-110G02
Chromosome19 (Build37)
Map Location 27,715,883 - 27,716,438
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110G02.T7 (MSMg01no110_g02.b1)MSMg01-110G02.TJ (MSMg01no110_g02.g1)
ACCAG323322AG323323
length7231,370
length of high quality
(start - end)
568 (63 - 630)---
definitionCHROMAT_FILE: MSMg01no110_g02.b1 PHD_FILE: MSMg01no110_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:57 2005CHROMAT_FILE: MSMg01no110_g02.g1 PHD_FILE: MSMg01no110_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCACTACCCTCGCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCCAGCAGAGGCACCATAACTTTCTCTCCC
TCCCTCCCAAATGCCCCACCTCACTCCTTAGTACCCCTCCATCAGAGCCT
CCGTAATAAGGAACAGTAGAATCTAGGCACACCCTCCTTAGTTGACGCAT
CCTCACTCTATTAATGCATGCAAATTGGGTGTTTCGGTCCTTTCTCTCAA
CACAAAAACCGAAGACCAGAATCGGGGAATGTACTGCCTCTATCACCAAA
ACACATAGTAAGTTTCAAACTCCATAGCTTTCACGATGGTGAAGTCAGAA
GGGATGGCCCTGCATCATATCTGAGTTCCCATCGCTTTCTCAGGTCTCCT
AGCTTATGGAAACTCCAGCCTTCTGGATGTTGAGGCTTGCCTTAAACCAA
GTCATCATTTTCACTATATCATGAAACACTTGGGTTTCGCTAAGGACTTA
TGTTTCAGATGTAATTCATGTGCTATAAAAGTCACCATTTCTAAGCATGT
AGTTCTGTGGACCTTTTGTTCATAGACTACCATCATGCCCATTAACAGAC
TCCTCATGTCCTGTTCCTCCAGACCTTTACACTTTGCTTTGTTTTGTTTT
GTTTTTGTTTTGCTGCTTTGTTCTTTCAACTTTTTATACCCCCCTTTACT
TCTCTTTTTTCTTCTCTATCTTT
CCAAACCAAANAANAAAAATAATATAATAATAAATCGTGTGTTGGCGGTG
GTTGTGTGGTGGGTGGTANNANCTATACTACACTAAGACGACGGAAACAG
CGCAAGAGTATGGAGAGAAGCGACGTCTTATTATTACTCATAGCCACGAA
ATAATACTGCGTTGGTCCGCGCGCGGGTGTTATTCTCTATATCTATACTT
ATAACTATTCTTCTCTNNTNCGATAAATGCTTGGCTGCGCATGATCTATA
CAGCATATCGTGCTATGCGCGAGCCGGAGACGCGAGCTCAAGTTTTCATC
NCCGCCGCCTGGGAGCGCGAACGCTAAGTATCACGCTAAGTGCGCGAGTG
TGAATTTTCTCACGCACTCTCTTGATAGCGTCATGCGCGGGACGTAATTA
TCTGCGCTCGCGCGCGCATTCCCTCCTGCTTTACTACACCGAGCGCACAC
ATTGAAGTGCAGCCAGACCGCAATTGTGATACCATAGTCGAGCATGCATA
CGAAGAGAGCGCGTGTCTCCCGCGCTCGCTCTTATAGCTAGCTGTATACA
CAGCGGCCATATAATTATTGACGAGAAGAAGACGAGAGATTGTTGGAAAG
TCGTCGCGTGAGTAAGCGAGAGGGAGGATGGAGNTGCGATTACACCGATG
CCACCGTTTGTCACTCGCAGGTACGCCGGCGCACGCGGAGATGGATCGCG
TCTGTGCGCGCGAGGTGAGTGGATGGGNAGCGTGAGTCGCGACGACGTGT
GAGGGAGTGTCGTGCGGGCAGTGGATGATGGATAGGGAGGAGGTACGAGC
AAGAGGATTAATAACATATACACGCCAACGAGAGCCAGCATAGTGACGCT
ATATGCGCGCAGTATGATCCTATGCCGCTCGCGCCGCCTGCACATTTATA
ATAACTACGCACGGACAGACGAATATATACCGGTCAGGGATATCCTAGCA
ATATGACAGCGCACACACTCACCCACAGAGCTCGCTCGCGCTGGTGTGGA
TNAGAGAATGGATCGCATGCAGCACGTTTATATATCGCGCGAGGTGACGT
ATGATGTAGCGATCATGCATGTGTGTACGCGAAGCACGCTAACGCGTACG
CGGATGCGAGANATGTCGCGCNCGTATGTTGTTGCGCCTGCAAGACGTTA
CTCGGCAATAATAGTATATTACGTCGAGCACGAGCTCCACATATACACGA
CCATTGATTAGTTGACATCGAGTACACGCATCACTCGGCACTGTACTCCA
CAGTCATCCGCAGCCNTCCTAGATGACGCGAGTGTATATCACACACGTAC
GACGACTCTTATATCTCTATACACNATATAACGAGCGACACGCGCACGTC
ATGTGATGATCCTACGACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_g02.b1 MSMg01no110_g02.b1 CHROMAT_FILE:
MSMg01no110_g02.b1 PHD_FILE: MSMg01no110_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:57 2005
         (568 letters)



>mm_chr19_27715679_27716646
          Length = 968

 Score =  975 bits (504), Expect = 0.0
 Identities = 543/556 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagcagaggcaccataactttctctccctccctcccaaatgccccacctcactc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagcagaggcaccataactttctctccctccctcccaaatgccccacctcactc 264

                                                                       
Query: 65  cttagtacccctccatcagagcctccgtaataaggaacagtagaatctaggcacaccctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 cttagtacccctccatcagagcctccgtaataaggaacagtagaatctaggcacaccctt 324

                                                                       
Query: 125 cttagttgacgcatcctcactctattaatgcatgcaaattgggtgtttcggtcctttctc 184
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtagttgatgcatcctcactctattaatgcatgcaaattgggtgtttcggtcctttctc 384

                                                                       
Query: 185 tcaacacaaaaaccgaagaccagaatcggggaatgtactgcctctatcaccaaaacacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaacacaaaaaccgaagaccagaatcggggaatgtactgcctctatcaccaaaacacat 444

                                                                       
Query: 245 agtaagtttcaaactccatagctttcacgatggtgaagtcagaagggatggccctgcatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtaagtttcaaactccatagctttcacgatggtgaagtcagaagggatggccctgcatc 504

                                                                       
Query: 305 atatctgagttcccatcgctttctcaggtctcctagcttatggaaactccagccttctgg 364
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 atatctgagttcccatagctttctcaagtctcctagcttatggaaactccagccttctgg 564

                                                                       
Query: 365 atgttgaggcttgccttaaaccaagtcatcattttcactatatcatgaaacacttgggtt 424
           |||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 atgttgaggcttgcctgagtccaaatcatcattttcactatatcatgaaacacttgggtt 624

                                                                       
Query: 425 tcgctaaggacttatgtttcagatgtaattcatgtgctataaaagtcaccatttctaagc 484
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 tcactaaggacttatgtttcagatgtaattcatgtgctataaaagtcaccatttctgagc 684

                                                                       
Query: 485 atgtagttctgtggaccttttgttcatagactaccatcatgcccattaacagactcctca 544
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 685 atgtagctctgtggaccttttgttcataggctaccatcatgcccattaacagactcctca 744

                           
Query: 545 tgtcctgttcctccag 560
           ||||||||||||||||
Sbjct: 745 tgtcctgttcctccag 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)