Query= MSMg01no111_a11.b1 MSMg01no111_a11.b1 CHROMAT_FILE:
MSMg01no111_a11.b1 PHD_FILE: MSMg01no111_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:50 2005
(740 letters)
>mm_chr19_21273606_21274745
Length = 1140
Score = 1299 bits (672), Expect = 0.0
Identities = 723/740 (97%)
Strand = Plus / Plus
Query: 1 ttggattaatacaaacaatccaggaccaggcctaaccacaaccttttatattttgtataa 60
|||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||||
Sbjct: 201 ttggattaatacgaacaatccaggatcagggataactacaaccttttatattttgtataa 260
Query: 61 agtatttgctagaaaaaaaaacccagtctttctcttatagacaaatgcaatgctttcaca 120
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 261 tgtatttgctagaaaaaaaaaaacagtctttctcttatagacaaatgcaatgttttcaca 320
Query: 121 tcttgtgggtgcaaagccatagtacagctgggaataaaagagtggggcatgatcatcaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgtgggtgcaaagccatagtacagctgggaataaaagagtggggcatgatcatcaac 380
Query: 181 agaggtgggagcacagggactatccccttgtgttgcctaaactactcataagagaaagaa 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 agaggtgggaacacagggactatccccttgtgttgcctaaactactcataagaggaagaa 440
Query: 241 ctggagtgggtacacttgagcattttcaatttaaagggcatgcatccaaaaggaaaggtg 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggagcaggtacacttgagcattttcaatttaaagggcatgcatccaaaaggaaaggtg 500
Query: 301 gaagatgctaatgtttctgggcatgctcagttcaagttctagtgtgcatgcatggtcaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 gaagatgctaatgtttctgggcatgctcagttcaagttctagtgtgcatgcatgatcaaa 560
Query: 361 attgaaacatgaggtagatgtggtcacatatcataattccatcactggagaggcagaggt 420
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 attgaaacatgagctagatgtggtcacatatcataattccatcactggagaggcagagtt 620
Query: 421 aagaatagtgtctctatgttaaaaccagattagtctacagattttcagacctgcactggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaatagtgtctctatgttaaaaccagattagtctacagattttcagacctgcactggc 680
Query: 481 atcagctacataatgaaatccaggctcagaaaaagaaaaagggaggtggcagacactaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcagctacataatgaaatccaggctcagaaaaagaaaaagggaggtggcagacactaac 740
Query: 541 cattagttaccctaggctgtgctctcttgagtattatgaaaaggtgttttctttggttgc 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 cattagttaccctaggctgtgctctgttgagtattatgaaaaggtgttttctttggttgc 800
Query: 601 ctgaataagtggatctgtggtttagtaaccttagctgataacttgcaagtctccccaaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgaataagtggatctgtggtttagtaaccttagctgataacttgcaagtctccccaaat 860
Query: 661 aaaaagaaccatgtcaaaggtgtgctaacagtcttttgaaggggatggaacattctctcc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaaaagaaccatgtcaaaggtgtgctaacagtcttttgaaggggatggaacattctctcc 920
Query: 721 cacaagtgtgacacttcccc 740
||||||||||||||||||||
Sbjct: 921 cacaagtgtgacacttcccc 940
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1140
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1130
Effective search space: 824900
Effective search space used: 824900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_a11.g1 MSMg01no111_a11.g1 CHROMAT_FILE:
MSMg01no111_a11.g1 PHD_FILE: MSMg01no111_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:50 2005
(698 letters)
>mm_chr19_21441636_21442734
Length = 1099
Score = 880 bits (455), Expect = 0.0
Identities = 515/541 (95%), Gaps = 11/541 (2%)
Strand = Plus / Minus
Query: 159 caggaatgatccaacatcagggtaaatttttagctttatcaaggattcttaggcttctat 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 caggaatgatccaacatcagggtaaatttttagctttatcaaggattcttaggcttctat 1040
Query: 219 gagctaacttaaaaacagaaatatcctggtcagcggttctcaaccttcctaatgctgcaa 278
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1039 gagctagcttaaaaacagaaatatcctggtcagtggttctcaaccttcctaatgctgcaa 980
Query: 279 tcttttaaaacagttcctcatgttggggtgacccccaaccataaaattattttcttgctt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 tcttttaaaacagttcctcatgttggggtgacccccaaccataaaattattttcttgctt 920
Query: 339 attcatatctttgatttgctactgttatgaatcataatgaaaatatttttggagatagag 398
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 919 cctcatatctttgatttgctactgttatgaatcataatgaaaatatttttggagacagag 860
Query: 399 gtttatcaaaagggtcatgacgtacaagttgagaactactgatgtagtctgacaaactgt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gtttatcaaaagggtcatgacgtacaagttgagaactactgatgtagtctgacaaactgt 800
Query: 459 cctaatttttgaagcctggagatatttggcaacatgggattttagtgttcattaccctag 518
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 799 cctaatttttgacgcctggagatatttgggaacatgggattttagtgttcattaccctag 740
Query: 519 aaatagccgattctttggggaaaatacactttaca-accagccatctgatttcatgtcac 577
||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| ||||
Sbjct: 739 aaatagccgattcttcgggaaaaatacattttacacaccagccatctgatttcatatcac 680
Query: 578 ttgtgaacctttggaaaatgtctgttaggcaatacatatatatatatatataccttcatt 637
| |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 679 tggtgaacctttggaaaatgtctgttaggcaatacatataca----------ccttcatt 630
Query: 638 cgtcacagcctggctcacagtcaacacaaaattgtaatatgctttgttaagggctcctac 697
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 629 catcacagcctggctcacagtcaacacaaaattgtaatatgctttgttaaaggctcctac 570
Query: 698 c 698
|
Sbjct: 569 c 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1099
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1089
Effective search space: 749232
Effective search space used: 749232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
