BAC Information

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BAC

Clone NameMSMg01-113G03
Chromosome19 (Build37)
Map Location 13,355,986 - 13,356,467
singlet/doubletsinglet
Overlap geneLOC667300
Upstream geneOlfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463
Downstream geneOlfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113G03.T7 (MSMg01no113_g03.b1)MSMg01-113G03.TJ (MSMg01no113_g03.g1)
ACCAG325534AG325535
length691697
length of high quality
(start - end)
485 (61 - 545)586 (73 - 658)
definitionCHROMAT_FILE: MSMg01no113_g03.b1 PHD_FILE: MSMg01no113_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:47 2005CHROMAT_FILE: MSMg01no113_g03.g1 PHD_FILE: MSMg01no113_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TAAATTTGCGGCGCTAAACGATCACTATCCAAAGAGGACCGCGGATTCAG
GATTTCTGCAATTTTTTTGTCTTTTAAAAATACTTCTGTAAAAATTATGT
GTATATTGTTTTAGTGGATGATTTGTTAAATGTCTTCATACAGTCAAGAT
AATGTAGAAAAGGATTTTAAAAACTGGGCATGTGTCTATGTATTTGATAT
TAATGGACGGGTCCAAAGAACTTTTAATTGTTATACTGACACATTCTAAC
GATTTTCATCTTGTTTGAATGTTTCTATTATTGCATTGATCATTTAGTGA
TAAATTGTAGAGCTTGCTTTTCCTAATATAGGATATGAGTAGTCAACTAT
TACCTTTGTTATAAGACATTGTAGCACAGCTCATAAAAGAATGCTGAGAT
TTTACATGACTTTTTTTCTGAGTGAGTATATCACAATGGTTTAATCTGCC
TTTTATTCATTGAAACTAGGCACTTTTAAATAAATTCTTACCCTGCAAAC
AGACTGCTTATACTAGAATGTGATGACTTTGAGGTTAATTTTTAAGTAAT
TTAAAATAAATTATCTGGACACTATATGACATGGTATTTCTGCAGGGATA
GACAGAATAGGAACAAAAGATAAAGTTATGGAGTTTATGTAAAAAAATTA
ATTTTGGTGTACATTTGAAACTTTCTGGTTCGACAAGGCGG
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXNGAACTTAATCTGTGTGGAAATTCTGTT
CACCCTTTGTTTCGCAGTAAACATAATCCATTTCTTAAGAAAAGAATGCT
GGAAGAGGATTTGTGAAATATCACATAGTAGGTTTTTAAGGTGTTGAAGT
GACAATTCTGCATAAAATATTTCCCCACTAAAATCTGACTACTTAAACTT
TTGTAAACATATTAGTGATAGGTATAATTCACATAAAATAAATGTGCTAT
GTATACCTACTATGAGTTACTCGAAAACCATTGTTTAATAAGAGTTTTGA
GGGCTAAAAACACTTTAATGTCAAAAGACTATTCTAAAAGTAGTTTTGAG
ATATGAAGTCACGGTACAAATGTCAAAACACTGAAGGAAATTTGATGATT
CATATAGTAATTTATTCTTCTCAGAAAGAATATAAAATGTAGTTTGGTTG
CTATAACTTCATTATGATCACTATATGTTCAGTTTAATTAGCAATAAACC
CATTAAGAAAAGACTCAAACCCAGAAGATAATCTTTCTGCATGCTGATGA
AGGGTTAGTAATAAATCAAATAAATCAATACACTCTCAACTACATTATAA
ACCTTGTGTCGTGAGGTGAGGCTCATGGTTGAATGGAATCTGGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_g03.b1 MSMg01no113_g03.b1 CHROMAT_FILE:
MSMg01no113_g03.b1 PHD_FILE: MSMg01no113_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:47 2005
         (485 letters)



>mm_chr19_13355786_13356667
          Length = 882

 Score =  890 bits (460), Expect = 0.0
 Identities = 478/486 (98%), Gaps = 5/486 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttttttgtcttttaaaaatacttctgtaaaaattatgtgtatattgttttagtggatg 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 682 atttttttgtcttttaaaaatacttctgtaaaaattatgtgtaaattgttttagtggatg 623

                                                                       
Query: 61  atttgttaaatgtcttcatacagtcaagataatgtagaaaaggattttaaaaactgggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atttgttaaatgtcttcatacagtcaagataatgtagaaaaggattttaaaaactgggca 563

                                                                       
Query: 121 tgtgtctatgtatttgatattaatggacgggtccaaagaacttttaattgttatactgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtgtctatgtatttgatattaatggacgggtccaaagaacttttaattgttatactgac 503

                                                                       
Query: 181 acattctaacgattttcatcttgtttgaatgtttctattattgcattgatcatttagtga 240
           ||||||||| |||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 502 acattctaatgattttcatcttgtttgaatgtttctattattgcattga----ttagtga 447

                                                                       
Query: 241 taaattgtagagcttgcttttcctaatataggatatgagtagtcaactattacctttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taaattgtagagcttgcttttcctaatataggatatgagtagtcaactattacctttgtt 387

                                                                       
Query: 301 ataagacattgtagcacagctcataaaagaatgctgagattttacatga-ctttttttct 359
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 386 ataagacattgtagcacagctcataaaagaatgctgagattttacatgatttttttttct 327

                                                                       
Query: 360 gagtgagtatatcacaatggtttaatctgccttttattcattgaaactaggcacttttaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gagtgagtatatcacaatggtttaatctgccttttattcattgaaactaggcacttttaa 267

                                                                       
Query: 420 ataaattcttaccctgcaaacagactgcttatactagaatgtgatgactttgaggttaat 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ataaattcttaccctgcaaacagactgcttatactagaatgtgatgactttgaggttaat 207

                 
Query: 480 ttttaa 485
           ||||||
Sbjct: 206 ttttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 882
Length adjustment: 10
Effective length of query: 475
Effective length of database: 872
Effective search space:   414200
Effective search space used:   414200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)