BAC Information

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BAC

Clone NameMSMg01-114J19
Chromosome19 (Build37)
Map Location 45,444,326 - 45,590,149
singlet/doubletdoublet
Overlap geneBtrc, EG627889
Upstream geneScd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1
Downstream genePoll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114J19.T7 (MSMg01no114_j19.b1)MSMg01-114J19.TJ (MSMg01no114_j19.g1)
ACCAG326449AG326450
length735745
length of high quality
(start - end)
186 (42 - 227)616 (76 - 691)
definitionCHROMAT_FILE: MSMg01no114_j19.b1 PHD_FILE: MSMg01no114_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:20 2005CHROMAT_FILE: MSMg01no114_j19.g1 PHD_FILE: MSMg01no114_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,444,326 - 45,444,506)(45,589,534 - 45,590,149)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTCTGTAGACCAGGCTGGCCTCTAACTCAGAAATCTGCCTGCCCCTGC
CTCCCAAGTGCTGGGATTAAACCTTTACTGTTTAAATGATAATTCTTTGT
GTTCGTAATAGATGAATGAGTGGCAGTGCATTGCCAGGCTGGACTTGGTG
TTAATGTAGGTACTGAGGAGGGTGAAGGCAGTCAGAATCCTCCTGTGGAT
TATACGGTGAGTTAAAGGCCAGCGTGGGTGACTTACTGAGGGCTTATTAC
AATGAAAACTGACAAGAAGGGATGCATAGGCGTTGTCTAACGTGCCTAGC
GAACCTGAATTTCAACTTCTCTAGCCCCCCCGAACAATATGCAAGAACCA
GAAGTGGATTATCTAATTATCTTCATTCACATAAAATGGTTTTTTTTTTT
CANTTTGCGTGCGTTAGGAAATTTTTGCCGCCCCCACTTTTTGGGCCTCC
CCAAAAAAAACACACTTCCCTCCTTTTTCCGTCTCAACCCCCCCGAACAA
AGTGTACCCTCTTCTCCCAAAATTCTTTTTTTTTTTTCTCCCCCCCGGGC
GCGCGGCCCCCCTCTTGCCTCTTTTCCCCCTTAATTTTTTCCTCCCCCCC
CCTTTTTCTTTTCCCCCCCCCCCCTTTTCTTTTTTCTTTCACCCCTTCCC
TATACACCCCCCCTCCCTTCGCCTGATAATCTCTC
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCCGCCTGCCCCTGCCTT
CCAGTGCTGGGACTAAGGGTGTGCACCATCATGCTTGGCTCACCTCCTGC
TTTCATGGCAAGTGCTCTTGTTCTGCATGCCCCAGGCAGGGTACACAGGA
ACCATGAGGAAACACCATGGTTCATGTGTACAGACAGGAAAGGCAGGTTT
AGTGGGTGCTTCTTGTATAGTGCCCAGAGAGGAGGACATAGGTAGTCACT
GTCACCTTATAATTTGGCCCAAATTTTTGGGTTATTATTTTAACACTGAC
ATTCAATAAAAAAGACACATATAAGCTAGGAATCTCATGAAGAACAGCAG
TAGTATCTGTCCCAGTCACTGCACTCTGGGCCAAGATGTTTCACACAGAC
TTAGCAATGCGGACTTGACTTTCACTGTCCTAAACATTAGCTTTTCTTCC
TACACAGACTCTAAGTTAAAGGCTCCAGTTTTGTGCTTTTCAGGGGCAAG
TTGGTCAAGATGAGCCTTCCTTCTCACCCTAAGCCCATGCTTCATGGCAG
TCGAGACCCTTGGCGAGCTGGAGAACTCTGCCGAGATAGAATTACCTACA
TTACTCTCTATTTGCATATTGACTTTATGTTTAAAAGCACTTTGTTTCTC
CTTTGCAGCTTACCCTCCTTTTGGAAAGCTATTTTTTTGTGCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_j19.b1 MSMg01no114_j19.b1 CHROMAT_FILE:
MSMg01no114_j19.b1 PHD_FILE: MSMg01no114_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:20 2005
         (186 letters)



>mm_chr19_45444123_45444708
          Length = 586

 Score =  350 bits (181), Expect = e-101
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtagaccaggctggcctctaactcagaaatctgcctgcccctgcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctctaactcagaaatctgcctgcccctgcctcc 263

                                                                       
Query: 64  caagtgctgggattaaacctttactgtttaaatgataattctttgtgttcgtaatagatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caagtgctgggattaaacctttactgtttaaatgataattctttgtgttcgtaatagatg 323

                                                                       
Query: 124 aatgagtggcagtgcattgccaggctggacttggtgttaatgtaggtactgaggagggtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgagtggcagtgcattgccaggctggacttggtgttaatgtaggtactgaggagggtg 383

            
Query: 184 a 184
           |
Sbjct: 384 a 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no114_j19.g1 MSMg01no114_j19.g1 CHROMAT_FILE:
MSMg01no114_j19.g1 PHD_FILE: MSMg01no114_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:20 2005
         (616 letters)



>mm_chr19_45589269_45590284
          Length = 1016

 Score = 1183 bits (612), Expect = 0.0
 Identities = 615/616 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagatccgcctgcccctgccttccagtgctgggactaagggtgtgcaccatcatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 acagagatccgcctgcccctgccttccagtgctgggactaagggtgtgcaccatcatgct 822

                                                                       
Query: 61  tggctcacctcctgctttcatggcaagtgctcttgttctgcatgccccaggcagggtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tggctcacctcctgctttcatggcaagtgctcttgttctgcatgccccaggcagggtaca 762

                                                                       
Query: 121 caggaaccatgaggaaacaccatggttcatgtgtacagacaggaaaggcaggtttagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 caggaaccatgaggaaacaccatggttcatgtgtacagacaggaaaggcaggtttagtgg 702

                                                                       
Query: 181 gtgcttcttgtatagtgcccagagaggaggacataggtagtcactgtcaccttataattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gtgcttcttgtatagtgcccagagaggaggacataggtagtcactgtcaccttataattt 642

                                                                       
Query: 241 ggcccaaatttttgggttattattttaacactgacattcaataaaaaagacacatataag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggcccaaatttttgggttattattttaacactgacattcaataaaaaagacacatataag 582

                                                                       
Query: 301 ctaggaatctcatgaagaacagcagtagtatctgtcccagtcactgcactctgggccaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctaggaatctcatgaagaacagcagtagtatctgtcccagtcactgcactctgggccaag 522

                                                                       
Query: 361 atgtttcacacagacttagcaatgcggacttgactttcactgtcctaaacattagctttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atgtttcacacagacttagcaatgcggacttgactttcactgtcctaaacattagctttt 462

                                                                       
Query: 421 cttcctacacagactctaagttaaaggctccagttttgtgcttttcaggggcaagttggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cttcctacacagactctaagttaaaggctccagttttgtgcttttcaggggcaagttggt 402

                                                                       
Query: 481 caagatgagccttccttctcaccctaagcccatgcttcatggcagtcgagacccttggcg 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 401 caagatgagccttccttctcaccctaagcccatgcttcatggcagtggagacccttggcg 342

                                                                       
Query: 541 agctggagaactctgccgagatagaattacctacattactctctatttgcatattgactt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 agctggagaactctgccgagatagaattacctacattactctctatttgcatattgactt 282

                           
Query: 601 tatgtttaaaagcact 616
           ||||||||||||||||
Sbjct: 281 tatgtttaaaagcact 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)