BAC Information

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BAC

Clone NameMSMg01-114O19
Chromosome19 (Build37)
Map Location 13,417,386 - 13,417,792
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466
Downstream geneOlfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114O19.T7 (MSMg01no114_o19.b1)MSMg01-114O19.TJ (MSMg01no114_o19.g1)
ACCAG326686AG326687
length716732
length of high quality
(start - end)
621 (43 - 663)407 (77 - 483)
definitionCHROMAT_FILE: MSMg01no114_o19.b1 PHD_FILE: MSMg01no114_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:44 2005CHROMAT_FILE: MSMg01no114_o19.g1 PHD_FILE: MSMg01no114_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGTTCTGAGCCCCATTTTTTAATAGGGTTATTTGATTTTCT
GGAGTCCATCTTCTTGAGTTCTTTATACATATTAGATATAAGTCGCTATC
TGATTAAGGATAGAAAAAGATCCTTTCCCAATCTGTTGGTGGCCCTTTTG
TCTTATCCCTGGGATACAGGGATAAGACATACAGATCTTTCCCTTCCTTA
GTTAGAGTCATGCCAAGGTATTTTATATTATTTGTGATTATTGTGAAGGG
TGTTCTTTCCCTAATTTCTTTCTCAGCCTGTTTATCCTTTGTGTACAGAA
AGGCCATTGACTTGTTTGAGTTAATTTTATATCCAGCTACATCACTGAAG
CTGTTTATCAGGTTTAGGAGTTTTCTGGTGGAATTTTAGGGTCACTTATA
TATACTATCATATCATCTGCAAAAGTGATATTTTGACTTCTTCCTCTCCA
ATTTGTATCCCTTGATTTCCTTTTGTTGTTGAATTGCTCTGACTAGGACT
TCAAGCACTATGTTGAAGAGGTAGGGAGAAAGTGGGCAGCCTTCTTTAGT
CCCTGATTTGAGTTGGATTGCTTCCAGCTTCTCACATTTACTTTGATGTT
GGTTAATGGTTTGCTGTAAATTGCGTTTATCATGTTTAGGTATGGGCTTC
GAATTCCTGTTCTTTC
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACAGCATATTAGATAAAAGAAA
GCAATATAAGTAACTGAGCATATGTACATAGAGAAAACTAATATCAGAAA
AAAGAAACAAATGTAAAAATTGAGAAGCTTGCAATGAAAAACATGCAAAT
AAACATAATTTCAGGGATAGACAATTTCAATGGTAAATTCTCCAAATACA
CAGCCCATACTAATACCTGAATATAAAGGAAAAATAAGCTAGTTTTTAAT
AAAATAAAAACAGAGCAAATATACATGCACCAAAATGGACATATCCAGAG
GTACATTTCAATGTGGACAAAAAGTCCCAGTCAGTCAAAATGACAATAAT
TATTAACTATCACAATATGCTAGAAAGAAAAAGTAAAAAGAAAATAATTT
AGTGTATCGATAATGGTAAAAACATTATTGACAAACAAAACACAAGAACT
CACAATTATCTAATTCCCATATTATGTGTATAAATACACTGTTCCTTAAT
GTCCAGGCCAAAATGATATTCATAGGCAAAAAAAGCACTCAGATCATGAA
CTTATAAGCTTAAATATAATCTATATGCACAAGTCATAAGAATTTTAATA
TTTCATTACAAATATCCAAAGTTATTATCCTAATGATTATTTTTCTTTTC
AAACTACTTTCATGAATGCACTCTTTACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_o19.g1 MSMg01no114_o19.g1 CHROMAT_FILE:
MSMg01no114_o19.g1 PHD_FILE: MSMg01no114_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:44 2005
         (407 letters)



>mm_chr19_13417186_13417992
          Length = 807

 Score =  779 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacagcatattagataaaagaaagcaatataagtaactgagcatatgtacatagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atacagcatattagataaaagaaagcaatataagtaactgagcatatgtacatagagaaa 548

                                                                       
Query: 61  actaatatcagaaaaaagaaacaaatgtaaaaattgagaagcttgcaatgaaaaacatgc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 actaatatcagaaaagagaaacaaatgtaaaaattgagaagcttgcaatgaaaaacatgc 488

                                                                       
Query: 121 aaataaacataatttcagggatagacaatttcaatggtaaattctccaaatacacagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaataaacataatttcagggatagacaatttcaatggtaaattctccaaatacacagccc 428

                                                                       
Query: 181 atactaatacctgaatataaaggaaaaataagctagtttttaataaaataaaaacagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atactaatacctgaatataaaggaaaaataagctagtttttaataaaataaaaacagagc 368

                                                                       
Query: 241 aaatatacatgcaccaaaatggacatatccagaggtacatttcaatgtggacaaaaagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaatatacatgcaccaaaatggacatatccagaggtacatttcaatgtggacaaaaagtc 308

                                                                       
Query: 301 ccagtcagtcaaaatgacaataattattaactatcacaatatgctagaaagaaaaagtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccagtcagtcaaaatgacaataattattaactatcacaatatgctagaaagaaaaagtaa 248

                                                          
Query: 361 aaagaaaataatttagtgtatcgataatggtaaaaacattattgaca 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaagaaaataatttagtgtatcgataatggtaaaaacattattgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)