Query= MSMg01no115_d03.b1 MSMg01no115_d03.b1 CHROMAT_FILE:
MSMg01no115_d03.b1 PHD_FILE: MSMg01no115_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:05 2005
(366 letters)
>mm_chr19_25707862_25708627
Length = 766
Score = 694 bits (359), Expect = 0.0
Identities = 362/363 (99%)
Strand = Plus / Plus
Query: 4 ggaattctttttcgttccacttggttatcacgtaagcaagcgtatctctttttgactaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttttcgttccacttggttatcacgtaagcaagcgtatctctttttgactaat 263
Query: 64 ctgaaagaatgagtccgataggaagtgagacgagtctcagcgtatacatcccctctgtta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgaaagaatgagtccgataggaagtgagacgagtctcagcgtatacatcccctctgtta 323
Query: 124 agcagctgtgagcattctgcccttgactgtgtcttacatccctttagctaagcaagtaat 183
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 agcagctgtgagcattctgcccttgactgtgtcttacatccctttcgctaagcaagtaat 383
Query: 184 gtcaccaaggcagataatgttatctctcacctttaaacacttggaaacacttctaaaaat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtcaccaaggcagataatgttatctctcacctttaaacacttggaaacacttctaaaaat 443
Query: 244 tggacatgcctacactttatcgcagcacattgtcaggtgacattagaagtaagttgtaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggacatgcctacactttatcgcagcacattgtcaggtgacattagaagtaagttgtaac 503
Query: 304 gattagttaaccagctgttgtgtagggcagtgattcattctggtggtgtagagtcattgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gattagttaaccagctgttgtgtagggcagtgattcattctggtggtgtagagtcattgg 563
Query: 364 cac 366
|||
Sbjct: 564 cac 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_d03.g1 MSMg01no115_d03.g1 CHROMAT_FILE:
MSMg01no115_d03.g1 PHD_FILE: MSMg01no115_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:05 2005
(411 letters)
>mm_chr19_25824455_25825266
Length = 812
Score = 685 bits (354), Expect = 0.0
Identities = 398/416 (95%), Gaps = 9/416 (2%)
Strand = Plus / Minus
Query: 1 tccttc-aatacagaagctaaagctccttatacactgttaaaatagtagaactgcgagtg 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tccttcaaatacagaagctaaagctccttatacactgttaaaatagtagaactgcgagtg 553
Query: 60 cacagaggaagcatgggagaaggttaaacaatggggttaacactgcctgcagtaagataa 119
||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 552 cacggaggaagcatggaagaaggttaaacaatggggttaacgctgcctgcagtaagataa 493
Query: 120 ataatttctagtgccccacagcacatcagggggcttagtctgtgataacataggttttac 179
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 492 ataatttctagtgccctacagcacatcagggtgcttagtctgtgataacataggttttac 433
Query: 180 aacgaactaaaagagtgagttggctctaaaggagtgatggccatttgaggatcagactgc 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 432 aacgaactaaaagagtgagttggctctaaaggagtgatagccatttgaggatcagactgc 373
Query: 240 taattctcctgatgtgatccataaacactattagattcactgaataaccacaatataccc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 taattctcctgatgtgatccataaacactattagattcactgaataaccacaatataccc 313
Query: 300 attgactgtgtacagttgttaaatgacaattcaaaactttaccc----gcgcaaaaaatg 355
|||||||||||||||||||||||| |||||||||||||||| | | ||||||||
Sbjct: 312 attgactgtgtacagttgttaaataacaattcaaaacttta---aagtg-gaaaaaaatg 257
Query: 356 ggtccaccaatcagcaaatgcaaatcactctgggagagagagaaggaagttacaaa 411
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 256 ggtccaccaatcagcaaatgcaaatcactctgggagagagagaatgaagttacaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space: 322806
Effective search space used: 322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
