XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AAGCCATTGGCGGGAAAACAAAAAGACTTTAAAATAATGAATCTCTTTTT
CAACCACTGTTATATTCAATTAATTTAACTACATTGAACCAAATTACCTT
TGGTTCTGAGAAGACAGCTGTAGACTGCTTATTATGCTGCTACAGGGACT
CAGTTCTTTTTGGTGTAAATGTCACTCCTGCTAGCTCTTTGTATAAAGAA
TTAATTCCAAGAGTCATATTTCCTTCTAATGGAAAGATTACTTTACTGAT
TGCTAGGAAAACAGGGTAATGGAAGGCACTCAATTAAACCAAGCCGTTTC
CAAATGCGATATATGTTTTATGATTGGCTTGTGATAGGCAATGCTTACTG
TGTCTACTTGATGTTCCCCTTTGAGCTTTGAACTCATGTCAAACTTTGTT
TTCATTGTTCTGTTGGCCCAGTGTTTCCCATTGTCAGCCTGAAGATCCCA
CTGGGCTGCAAAGGGGAATCATTTGTTGCCTTCAGTTTACCTTGGAGGAT
TTACATCGGCTCAATTGATGAAGTAGCTAAGAATTTTTTTCCTCCCTTGC
CCCATGGGTGGTGTAGGAAAGAGATTGTTCCCCACATTTGCCTCAGGAGA
CACTGGTTTTGAAATTGTGTCATTTCCACTAGCCCTAGCCTTTCATTGGG
ATGGCATGAACCTTTTGAACCAGAGGGA

NNNCCACGATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGTCACTGTGGTCAATA
CCAGTTGACATAACTCAATAAAATTGTTCAAGGATCCTTAATAGTTTTGA
GTGTATTAGTCTACAAAAACATTGCTTTTCAACATGAGCAGTTACTGATG
AGGAATGGAAACAAAACATCCACATTAAAAAAAAACCCTTTACAATATGT
ATTTATTTATGTGTGTATGTACACGCCACAGTATGTGAGTGGCAGTCAGA
AACAACTTGTGGGTTCCTCTCCATGTGAGTCTGGGGCACTGAATTCAGGT
TGCCAGGCATGGAGGCATGTCCTTTACCTGCTGAACTATCAATATAGCCA
TGAGAATACTTTCTGGTTTTCAATGAAAAACTTTCATATAATATACTTTG
ATTAATTTCCCCTTCTCCAGTTCTTCCCGTCTCCCACTTCTGTCCCCATT
CAATTTCTTGGTCTTTTACTCCTTCTCTCTAAAAATATCCAGAAAGCAAA
AACAAACTACTGATACCTAAACCTTCCACAAAACACAAAAATGAGAATCA
GATCACTTAAAAGACCAATAAGACAAAATGAAATTAGACATTCAGAGAAA
ACCATGGAGTTTGCTTTGTCTTGGTCAATTATGTCTCGCCATGTTACCTG
CCCTAGAGCATAACTATTATACCCAG

Query= MSMg01no115_k03.b1 MSMg01no115_k03.b1 CHROMAT_FILE:
MSMg01no115_k03.b1 PHD_FILE: MSMg01no115_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:37 2005
         (587 letters)



>mm_chr19_19009715_19010700
          Length = 986

 Score = 1096 bits (567), Expect = 0.0
 Identities = 579/583 (99%), Gaps = 1/583 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagccattggcgggaaaacaaaaagactttaaaataatgaatctctttttcaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 gaattccaagccattgg-gggaaaacaaaaagactttaaaataatgaatctctttttcaa 728

                                                                       
Query: 65  ccactgttatattcaattaatttaactacattgaaccaaattacctttggttctgagaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ccactgttatattcaattaatttaactacattgaaccaaattacctttggttctgagaag 668

                                                                       
Query: 125 acagctgtagactgcttattatgctgctacagggactcagttctttttggtgtaaatgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 acagctgtagactgcttattatgctgctacagggactcagttctttttggtgtaaatgtc 608

                                                                       
Query: 185 actcctgctagctctttgtataaagaattaattccaagagtcatatttccttctaatgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 actcctgctagctctttgtataaagaattaattccaagagtcatatttccttctaatgga 548

                                                                       
Query: 245 aagattactttactgattgctaggaaaacagggtaatggaaggcactcaattaaaccaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aagattactttactgattgctaggaaaacagggtaatggaaggcactcaattaaaccaag 488

                                                                       
Query: 305 ccgtttccaaatgcgatatatgttttatgattggcttgtgataggcaatgcttactgtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 487 ccgtttccaaatgcgatatatgttttatgattggcttgtgataggaaatgcttactgtgt 428

                                                                       
Query: 365 ctacttgatgttcccctttgagctttgaactcatgtcaaactttgttttcattgttctgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctacttgatgttcccctttgagctttgaactcatgtcaaactttgttttcattgttctgt 368

                                                                       
Query: 425 tggcccagtgtttcccattgtcagcctgaagatcccactgggctgcaaaggggaatcatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tggcccagtgtttcccattgtcagcctgaagatcccactgggctgcaaaggggaatcatt 308

                                                                       
Query: 485 tgttgccttcagtttaccttggaggatttacatcggctcaattgatgaagtagctaagaa 544
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 307 tgttgtcttcagtttaccttggaggatttacatcagctcaattgatgaagtagctaagaa 248

                                                      
Query: 545 tttttttcctcccttgccccatgggtggtgtaggaaagagatt 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttttttcctcccttgccccatgggtggtgtaggaaagagatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 986
Length adjustment: 10
Effective length of query: 577
Effective length of database: 976
Effective search space:   563152
Effective search space used:   563152
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)