Query= MSMg01no115_k07.b1 MSMg01no115_k07.b1 CHROMAT_FILE:
MSMg01no115_k07.b1 PHD_FILE: MSMg01no115_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:38 2005
(302 letters)
>mm_chr19_43523517_43524220
Length = 704
Score = 549 bits (284), Expect = e-161
Identities = 294/298 (98%), Gaps = 2/298 (0%)
Strand = Plus / Plus
Query: 7 gaattcttactagtattttaaacacataactacacataagcatagccttacatttttaaa 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttactagtattttaaacacataactacacataagcatagccttacatttttaaa 266
Query: 67 aagaaaataaaggggggg--gtgtaaaaggatcctgctatgatttacaaatctaatggtc 124
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagaaaataaagtgggggttgtgtaaaaggatcctgctatgatttacaaatctaatggtc 326
Query: 125 tagtataatcccgagagtgattgtctcatatgttatttttactacagtttcctcaggatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tagtataatcccgagagtgattgtctcatatgttatttttactacagtttcctcaggatt 386
Query: 185 gaacactgtaatataggaggtgtagtttatgattcggacactttgaggtttattttactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaacactgtaatataggaggtgtagtttatgattcggacactttgaggtttattttactt 446
Query: 245 agcatacagtttactccctaggagactgtcttaagagaaaactaactctgtgtagaca 302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 447 agcatacagtttactccctaggagactgtcttaagagaacactaactctgtgtagaca 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 704
Length adjustment: 9
Effective length of query: 293
Effective length of database: 695
Effective search space: 203635
Effective search space used: 203635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_k07.g1 MSMg01no115_k07.g1 CHROMAT_FILE:
MSMg01no115_k07.g1 PHD_FILE: MSMg01no115_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:38 2005
(435 letters)
>mm_chr19_43657160_43657994
Length = 835
Score = 795 bits (411), Expect = 0.0
Identities = 429/435 (98%)
Strand = Plus / Minus
Query: 1 tcccagtggtcaaagaggcaacagaatgtggttccctcagtacctgtgtccccaacttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tcccagtggtcaaagaggcaacagaatgtggttccctcagtacctgtgtccccaacttag 576
Query: 61 gcaagtattgcactactgagttacagccccagacccgctgctgtgagacacttccttacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gcaagtattgcactactgagttacagccccagacccgctgctgtgagacacttccttacc 516
Query: 121 aagttacttaagctggcattgaagctaccctgtcatcaggtagccctttcaaatgccctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aagttacttaagctggcattgaagctaccctgtcatcaggtagccctttcaaatgccctt 456
Query: 181 aactattctgtttatccctggtgattctcggtcctctgacatccctgaaggccctgctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aactattctgtttatccctggtgattctcggtcctctgacatccctgaaggccctgctgt 396
Query: 241 gtcatagcgcggactcaggataaaatgagcagtcagtattagcttctgccactggtgtta 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtcatagcggggactcaggataaaatgagcagtcagtattagcttctgccactggtgtta 336
Query: 301 actaatggccacgacctcactggtttgacacagaagaaattcactctcttatggtttgcg 360
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 actaatggccacaagctcactggtttgacacagaagaaattcactctcttatggtttgcg 276
Query: 361 aagcagagagctttatggggttgaaatctgggtgctggtagagctacctccttcaggaag 420
||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 275 aagcacagagccttatggggttgaagtctgggtgctggtagagctacctccttcaggaag 216
Query: 421 ggtgtcggacagagg 435
|||||||||||||||
Sbjct: 215 ggtgtcggacagagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
