BAC Information

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BAC

Clone NameMSMg01-117G23
Chromosome19 (Build37)
Map Location 37,383,209 - 37,383,443
singlet/doubletsinglet
Overlap geneIde
Upstream geneLOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, LOC100043010
Downstream geneKif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117G23.T7 (MSMg01no117_g23.b1)MSMg01-117G23.TJ (MSMg01no117_g23.g1)
ACCAG328568AG328569
length711693
length of high quality
(start - end)
235 (128 - 362)170 (79 - 248)
definitionCHROMAT_FILE: MSMg01no117_g23.b1 PHD_FILE: MSMg01no117_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:59 2005CHROMAT_FILE: MSMg01no117_g23.g1 PHD_FILE: MSMg01no117_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTTCCAGGATACCCAAACTCAGCTCCCAGCACCCACACTGGGTGA
CTAACAACCACCTGTAATGCCAGCTCCAAGAAACCTAATTCCCTCTGATT
TCTAAGGGCATCCCACACATGGGGCACACAGCACTCAAAGACACAATTAA
TTGAATCAAAATAGATCTTACAAACAAACAAAGAAATTGAACACAAGATA
GACTATAATTTGTTGTGATTGGATACATAAAACAGATTTAATTTCTGTAC
GATCTCATAACTTATTTTCATTGGTAAAGATTTCTAAACTTTGACCCTTA
ATGTATTTTTTTATTTTTAAAGCCCCGCCTCCCACCACTTTTATATTGAT
AAGGCATTTAATACTTAGCACTTAACATAGACTGATAATAATCCATACTA
ATCTGAACGTTTTCCCCATTTCATCACTAAATAAAATGCTCTAAATCCTT
GCTCCAGATGGACAGTGTTCAGCTGTGCTGGGAGAGAGGACGCCTGGCCT
GTGTCCCTGGATGTATTACTCTCGCCTGGTAAATTATCTGCTATGACAGT
GCAAGACTATAGGAAACCTGAGCTTGAACTGGTCAGTCCTTCTTTTCTCC
TAAGAATATCAACCCCCGGACTTTATAAAGGTTGTATGTAGGATTTGTTT
TGCCTCTGGAA
NTTTCATGCTAGGGTAGGCTGGCGCCGCCTGGTTTCAAAAAGAGGTGAAC
TATAGAAGGATCCCCGAAATCAATTGTCAAAACTTCAACAAGTTTGTTTT
AAAACTATAGAGGGTTGGAGAGATGGCTCAGAGGTTAAGAGCATTGGCTG
CTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGCACCCA
CCCACCCGTGACCCACAGAAGTAAAATAAATCTTAAAAAGTAAAACTAGC
CGGATGTGGTGTCGCACACCTTTAATTTCAGCACTCGGGAGGCAGTGAGT
TTGAAGCCAGCACAGAGTGATTTCCAGGACAGCCAGGGCTATACAGAGAA
ACCCTGTCTCGAAAAACACCACCACCTTTCTGCTGGGTGCCGGCTGCCTG
CTGTCGAGATGGGCAAGTTCATGAAACCTGTCAAAGTGGTGCTGGTCCTG
GCCGGACGCTACTGCGGACGTATAGCCATCATCGTGAATAACATTGACAA
TGGTCTCTCGGACCGCCCTTTATAGCCATGCCCTGTAGACTGGAATTGAC
CAAAATCCCTGTCAAGAGATTGTTGCCATGGTCTAAATAATGATCGCCAA
CGCGACCAATATCATATCCTTTGTGAAAGTTTATAACTACAAACCATCTC
ATGTCCAAAAGGTCCCCTGTGCATATCCCCTTGCAACATAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_g23.b1 MSMg01no117_g23.b1 CHROMAT_FILE:
MSMg01no117_g23.b1 PHD_FILE: MSMg01no117_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:59 2005
         (235 letters)



>mm_chr19_37383009_37383643
          Length = 635

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaacctaattccctctgatttctaagggcatcccacacatggggcacacagcactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaacctaattccctctgatttctaagggcatcccacacatggggcacacagcactca 260

                                                                       
Query: 61  aagacacaattaattgaatcaaaatagatcttacaaacaaacaaagaaattgaacacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagacacaattaattgaatcaaaatagatcttacaaacaaacaaagaaattgaacacaag 320

                                                                       
Query: 121 atagactataatttgttgtgattggatacataaaacagatttaatttctgtacgatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagactataatttgttgtgattggatacataaaacagatttaatttctgtacgatctca 380

                                                                  
Query: 181 taacttattttcattggtaaagatttctaaactttgacccttaatgtattttttt 235
           ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacttattttcactgggaaagatttctaaactttgacccttaatgtattttttt 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)