BAC Information

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BAC

Clone NameMSMg01-120P04
Chromosome19 (Build37)
Map Location 36,994,082 - 36,994,537
singlet/doubletsinglet
Overlap geneFgfbp3
Upstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2
Downstream geneBtaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120P04.T7 (MSMg01no120_p04.b1)MSMg01-120P04.TJ (MSMg01no120_p04.g1)
ACCAG331187AG331188
length7051,033
length of high quality
(start - end)
468 (73 - 540)---
definitionCHROMAT_FILE: MSMg01no120_p04.b1 PHD_FILE: MSMg01no120_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:34 2005CHROMAT_FILE: MSMg01no120_p04.g1 PHD_FILE: MSMg01no120_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAGAGGATCC
GCGGAATTCTAGATTACCTGGAAGGGCCCTATTGGAGTAGAGCGAATGAC
TGCATAAGGGATTAGTCTGTTTTAAACGGCTGTGAATGAACCTTTTATCA
ATGGGACAGAAGGGGCCTCCCCCTTCATGCCCCTCCCAGACTTCTCTCAG
TAGGTTTCGGCCACTGCTAACACACACAGAAGATACACCCGCGTGCAGAC
CCACCATGCCGCAGAAGTATGATAGAAGCAGCCATGTGACATGAAATATA
AAATGCTGTATTTTGCTCTCACCGCTGAAAATAAGACAAATGTTAACAAA
ACTTTCTTTCCTTTTGAAACTTGTACATATTTATCTGGTCTATATATAGT
TAAGAAAGATGAAATGAAACAATAATATTCAGAACCAGATGCTATTTGCA
GGTTTTTTTTGTTTTGTTTTGTTTTTTTTTCGTTTTGCATTGCATGTATT
TCTTCTGTGTGTGTGTGTACCCCATAGATCCAACTCAGCTTGTAGGGTCC
GGTGGGGTGACAAAGTGCCTTTGCCTACTGAGTCATCTCATAGGCCCCAC
TATTTTCAGTCTTTCCATTTATCACGCCCCTCAGTTCTGTATTTTCATCA
CCACATCCAAGTAGGGACATTTTGGCTTTTAACCATTTGGGACATGAAAG
ATTAG
NATATCNNNAANAACTCCCACCCTCCATACCCCCTACTACCCCACCCAAC
ATATAAATACTAGGCCCCATGATAGTGGCCAGATCTGTATAAACCGTCTT
TTCGAAAAACGTGGTAATGACACTATATTAATTTCTCCCCGCGAATTCCT
CTATTACTGCTAACAACATCCCCTCTCTTACTTACCACGCGATCTCGCTA
ATCACTTGGTTGATACTAAACACTTCGCATTCAAACCCGTTCCTGCTATG
TATAACACACATATGTTTTCGACGCACTGATTCTTGTAAACATTATACAC
CATTCATTACCACCCTGAGACTATGTCTCCATATGTCAAACGTTAATCTA
TGATCACACGCCGGAGAGACGACGATGACCCCACGACCAAGAGCTGTTGT
CCTTTAATCATAAATATACCCCGCCCTCTTTCCTTCTATTTTACCCACCC
CGGCCTGTTTTTCACACTTTCCCACATGACCCGTCGTCGCGCCTATCTTT
TTCTACGAACCTTCTCCCTCCCCCGCCCCCTTTTTACTCCTCCGCCCTCA
CCCTATATTTTTTTTTCTACAAACACACCCCTCAATATTTCGATTTGTCC
GCGTTTCTGATATTCTTCTTTGATCCTTACAACTCTTTGTTTTCCGCGCC
CTTGTGTACGCATTTTTCCCCATACGGACCCTCTTAAAAAAACCCCTCGA
CACCATACCACCTCCTCACAACANAATTCCAATACCGATTGCTCTTTCTT
TTTTTCTCCTACACCCACACCCTCAATTCTATTAATTTATCCCCGATACA
CTCCCACTACCCTCCCTTTTCCCCCTCTCAAATCCTCCTTTTTTTGTACT
CCCTCTTATCCTCCCCCTTACCACTTATCGCCCCGTTATTTATATTTTTT
GCATCATTATCCCACTTATTTGTAATCAACCGTCGTTTAACTCGCGCCCT
CCATTTTCTATATTCCATCCCCATGTTCACGTTTGGCAATACCTTTTCTC
CTCACCCCCCACACGTTTTATTCTATTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_p04.b1 MSMg01no120_p04.b1 CHROMAT_FILE:
MSMg01no120_p04.b1 PHD_FILE: MSMg01no120_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:34 2005
         (468 letters)



>mm_chr19_36993882_36994749
          Length = 868

 Score =  795 bits (411), Expect = 0.0
 Identities = 450/467 (96%), Gaps = 12/467 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggccctattggagtagagcgaatgactgcataagggattagtctgttttaaacggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggccctattggagtagagcgaatgactgcataagggattagtctgttttaaacggctg 260

                                                                       
Query: 61  tgaatgaaccttttatcaatgggacagaaggggcctcccccttcatgcccctcccagact 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaatgaacctgttatcaatgggacagaaggggcctcccccttcatgcccctcccagact 320

                                                                       
Query: 121 tctctcagtaggtttcggccactgctaacacacacagaagatacacccgcgtgcagaccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 321 tctctcagtaggtttcggccactgctaacacacacagaagatacacccgcgtgcaga--- 377

                                                                       
Query: 181 accatgccgcagaagtatgatagaagcagccatgtgacatgaaatataaaatgctgtatt 240
           | ||   ||| |||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agca---cgcggaagt--gatagaagcagccatgtgacatgaaatataaaatgctgtatt 432

                                                                       
Query: 241 ttgctctcaccgctgaaaataagacaaatgttaacaaaactttctttccttttgaaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttgctctcaccgctgaaaataagacaaatgttaacaaaactttctttccttttgaaactt 492

                                                                       
Query: 301 gtacatatttatctggtctatatatagttaagaaagatgaaatgaaacaataatattcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtacatatttatctggtctatatatagttaagaaagatgaaatgaaacaataatattcag 552

                                                                       
Query: 361 aaccagatgctatttgcaggtttttttt-gttttgttttgtttttttttcgttttgcatt 419
           |||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct: 553 aaccagatgctatttgcaggtttttttttgttttgttttggttttttt-cgttttgcatt 611

                                                          
Query: 420 gcatgtatttcttctgtgtgtgtgtgtaccccatagatccaactcag 466
           |||||||||||||||||||||||||  |||||| |||||||||||||
Sbjct: 612 gcatgtatttcttctgtgtgtgtgt--accccagagatccaactcag 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)