BAC Information

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BAC

Clone NameMSMg01-121F19
Chromosome19 (Build37)
Map Location 12,995,483 - 12,995,709
singlet/doubletsinglet
Overlap genenone
Upstream geneAV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448
Downstream geneOlfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121F19.T7 (MSMg01no121_f19.b1)MSMg01-121F19.TJ (MSMg01no121_f19.g1)
ACCAG331495AG331496
length691689
length of high quality
(start - end)
---227 (126 - 352)
definitionCHROMAT_FILE: MSMg01no121_f19.b1 PHD_FILE: MSMg01no121_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:07 2005CHROMAT_FILE: MSMg01no121_f19.g1 PHD_FILE: MSMg01no121_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATTCGCGGCGCTAATACGACTCCTATTCCGAGAGATCCGCGGAATTAT
CCATTTTCTCTACATTTTCTGCTTTTTTTTTTTTGACCAACGCTTTTGCA
GTAGGATATGAGGATTTTAGCAGCGAAGTCTGTATACTGCACTCAGTTCT
CAATGATATAGATAAACTTCTTAAGGATCTTCTTGCGCAATAAGAACAAT
AAATGTCTTGGGGAACATTTTTTTCTCATGAAGATTATGTCATCAAAATG
AAAATTAAATATACAAGTAAAAAGGTTAAAGAAATAAAATTTCTGCCCTA
AAATATCTCTGAGTGCTTTATTAACGAATGTCAAAATTTGGAAGTGAGAG
ATACTTTATAGACCCACCCCCCCGAGACCCACTAGACATACACAGAGAGA
CACAGAGAGACAGAGATTTTCTAACACTTGAATACCCCGCGGATACCCGA
TCTGGCATTACCCAACACTAAAACTAAAAGAGGTATCAAGCTGGATCGCG
GTGCACCATGCCTTTGATCCCAGAACTCGGGAAGCACAAACAGGTAGATT
TCTGAGGTTGACGCCAGCCTGGTCCACCACGCGAGCTCCTGAACTGCTCG
GGCTATATCGAGACACCCCCCCCCCCCACAACTTAACACAATAAAAAAAT
AAGGTGTCAAGGCCTACCAAAAACCAGGACGATTCTACGCC
ATAATGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGTAGAAGGGCTTATCTCTTTGTTGTT
TGTTTCTTATGGAAGCCAACTCCAGTCACATGACATTTTTCCTCTCACTG
CATCTACACCATATACATCTTCCAGTGACTCTGCATTAACATATCATCAA
TATAGAGGTTAGGATTTCAACATAAGCATTTTGGTAGCATATAAGCATTA
ATAACATGAATTCTTTCAAAAGTATTACAAAATTTATTTAATTTTAGTCT
CATTTCATTCTATCCCACCTATGTCAAGTTATATAAAAATACTCTATAAT
AAGGATTTTTTTTTCCCCCCACCCCCTTTAAATTTAATTAGTCTCATTGT
AGAGTAAAGTACATAGGACATGAAAATTACCATTGGCAGGAGTCATTAAC
TTATATGCCAGGAATTATGAAACTTACTCTGTGGGAATTACGTTTTCCCA
TTAGGACTGTTTTACATTCACATCACGAATCCTGGTTTCATTACCCTAGT
ACATCTCCAGGTCAGATATCTCTGGATGCAAACGCCAAATATGCTTTACA
TAATGTCCCTGAGTTTGTCTTACATATATCTATATATATGACTACCCACT
TTTTTCTTTTTCTTTTTTTAATAACCTCCTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_f19.g1 MSMg01no121_f19.g1 CHROMAT_FILE:
MSMg01no121_f19.g1 PHD_FILE: MSMg01no121_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:07 2005
         (227 letters)



>mm_chr19_12995283_12995909
          Length = 627

 Score =  424 bits (219), Expect = e-123
 Identities = 225/227 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacatgacatttttcctctcactgcatctacaccatatacatcttccagtgactctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacatgacatttttcctctcactgcatctacaccatatacatcttccagtgactctgca 260

                                                                       
Query: 61  ttaacatatcatcaatatagaggttaggatttcaacataagcattttggtagcatataag 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ttaacatatcatcaatatagaggttaggatttcaacataagtattttggtagcatataag 320

                                                                       
Query: 121 cattaataacatgaattctttcaaaagtattacaaaatttatttaattttagtctcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattaataacatgaattctttcaaaagtattacaaaatttatttaattttagtctcattt 380

                                                          
Query: 181 cattctatcccacctatgtcaagttatataaaaatactctataataa 227
           || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactctatcccacctatgtcaagttatataaaaatactctataataa 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)