BAC Information

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BAC

Clone NameMSMg01-127I11
Chromosome19 (Build37)
Map Location 11,159,220 - 11,159,641
singlet/doubletsinglet
Overlap genenone
Upstream geneFads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a
Downstream geneGm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127I11.T7 (MSMg01no127_i11.b1)MSMg01-127I11.TJ (MSMg01no127_i11.g1)
ACCAG336041AG336042
length709709
length of high quality
(start - end)
426 (43 - 468)577 (71 - 647)
definitionCHROMAT_FILE: MSMg01no127_i11.b1 PHD_FILE: MSMg01no127_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:18 2005CHROMAT_FILE: MSMg01no127_i11.g1 PHD_FILE: MSMg01no127_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATCCACTTCGATTACAAAATCCCTGTACATTAAAAATAAAGTTTGTTC
ATGGAAAAATGAAAAGAAAATATTGTTTAATACCTTTTATTCTGTTATAC
TATCTGGAATGCAGTGAGGTACAATACAGCGGTTATATGAAATACGAGAC
ATCCACTTCTGTGGTTTATGCTTTAAAGCCCATGATGGAAACCTGGCCTG
CCATATGAATTTGCAAATAAAATTTTATTGGAATACAGCCTCACATACTG
TTACTACAGCTTACTGATATCTGAATTCATGTTGACACAACGGAGTTGAA
AAGTTACAATAGAAAGCACATAAGCTGTAGGGTCACAAATATTTCCTACT
TGGCCCTTCCCGGAAAGAATGATGATTGCTGGTACAGAAGTTAGAATGTC
ATCTCAGTTGACATAGCATGTACCAGAAGCAACTGGCCATAAGACAAAGT
TCAGCAAGTTCTGTGTAAGAAATGAGGAGGGCCACCTTATTAAACTAATG
ATTACCATAAACAGCTTCGAACAGCATCAGAGCCCAGCCAGGAAAGGGTG
AGTTTCACATTCTACTTTGATTTTACCATATGACTTCTGGCCATTTATAA
GTCCTTCTTTCTATCCAGGACACACCTTCTCGCACTTTAGACTTCTTTAA
AGCTTGGCA
TTAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTTACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATTGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGCGGAT
ATTAGCCCCATACCTAGGATTCCCAAGATATAAGGTACAATTTGCTAAAC
ACATGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_i11.b1 MSMg01no127_i11.b1 CHROMAT_FILE:
MSMg01no127_i11.b1 PHD_FILE: MSMg01no127_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:18 2005
         (426 letters)



>mm_chr19_11159016_11159841
          Length = 826

 Score =  764 bits (395), Expect = 0.0
 Identities = 416/423 (98%), Gaps = 2/423 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatccacttcg-attacaaaatccctgtacattaaaaataaagtttgttcatgga 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatccactt-gtattacaaaatccctgtacattaaaaataaagtttgttcatgga 263

                                                                       
Query: 64  aaaatgaaaagaaaatattgtttaataccttttattctgttatactatctggaatgcagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaatgaaaagaaaatattgtttaataccttttattctgttatactatctggaatgcagt 323

                                                                       
Query: 124 gaggtacaatacagcggttatatgaaatacgagacatccacttctgtggtttatgcttta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaggtacaatacagcggttatatgaaatacgagacatccacttctgtggtttatgcttta 383

                                                                       
Query: 184 aagcccatgatggaaacctggcctgccatatgaatttgcaaataaaattttattggaata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagcccatgatggaaacctggcctgccatatgaatttgcaaataaaattttattggaata 443

                                                                       
Query: 244 cagcctcacatactgttactacagcttactgatatctgaattcatgttgacacaacggag 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 cagcctcacatactgttactacagcttagtgatatctgaattcatgttgacacaacggag 503

                                                                       
Query: 304 ttgaaaagttacaatagaaagcacataagctgtagggtcacaaatatttcctacttggcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgaaaagttacaatagaaagcacataagctgtagggtcacaaatatttcctacttggcc 563

                                                                       
Query: 364 cttcccggaaagaatgatgattgctggtacagaagttagaatgtcatctcagttgacata 423
           |||   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctttttggaaagaatgatggttgctggtacagaagttagaatgtcatctcagttgacata 623

              
Query: 424 gca 426
           |||
Sbjct: 624 gca 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)