BAC Information

Click to search

BAC

Clone NameMSMg01-128O10
Chromosome19 (Build37)
Map Location 20,089,780 - 20,090,131
singlet/doubletsinglet
Overlap genenone
Upstream geneRorb, LOC100042218
Downstream geneLOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128O10.T7 (MSMg01no128_o10.b1)MSMg01-128O10.TJ (MSMg01no128_o10.g1)
ACCAG337053AG337054
length715715
length of high quality
(start - end)
670 (44 - 713)333 (72 - 404)
definitionCHROMAT_FILE: MSMg01no128_o10.b1 PHD_FILE: MSMg01no128_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:08 2005CHROMAT_FILE: MSMg01no128_o10.g1 PHD_FILE: MSMg01no128_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGAAACTACCAAAAAAGAAACATATTAGAAACAGAATAATCTAATT
AAAAATAGGATATGGACCTAACCAGAAAAATCTTAATACATGAACTCAAA
TGGCTGCAAAACAATTAAGGAAATGTTCAACATCTTTAGCCATCAGGAAA
ATACAAATCAAAACTACATTGAGATTCTGCCTCACACCCATCAGAATGGC
TAAGATCAATGATATGAATGTTAGCTCGTGCTGGTGAGAATATGGAAAAC
TCATCCATTGCTTATTGGAGTGCAAACTTTTGCAGCCATTATGGAAATCA
ATATTGCAATTCTTCACAAGGTTGGGAATTAATCTACCTCATGACCCATC
ATGCCACTTTTGGGCATATCCACAAAGGATGCTCCATTTCACCACAGGTA
TAGTAGCCAAACCATGTCCATTGTTAATTTATTAATAAGAGACAGAAATT
GGAAACAACATAAATTTTCCTCAACTGAAGAGTAGGTAAAGAAAATATAG
TACATTTACACAATGGACTATTTAAAATGCTATTAAAATACAGAATCATG
ACATTTTTAACAAACAGATTGAATTAGAAAAATCATGACTGAGATAACCC
TGCTCTCCAATTATAAATATAATGTGTGTTCATTTATATGTGTGCAGTAA
ATAAATGATAACCAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCCAGAGAAATTCCAAACTAAGGACATGAGCTTCTACCTTAG
CTGGACATAGTGATGTCCGAGTTGGCAGGATGTCTCATGTGTCAGAACAA
TCAGGTAGCAAACACGAGATGAAAGTAACAACACAAATACTCGCAGAAGA
GTCAAAAGAGCTGTTATGCATAATATAGAACTAAAATGGCAGATAAAGAT
CATGCCACAGGATCTAGAATAACAAATGGTGTCATGGATTGTTCATTATA
TACTAGGTTCCATGTGTACTTTTTGCTGTATTGTTTATTATTTCATAAAT
CATAGTTTAGGTAAATATATAATAAGTTTGATAAAGATTATCTACTACTA
GAGAGTAGCATACAGGGTTGATACATTAATAAACATAGATTATCCTTAAG
AAATCTAAGTCTAGTATTCAATGGAAAGAATACATATCCTAATAAAATTT
CCATGCTCACTGACAATTATTTAGGACTTTGTGATAGCTTATATTGATGG
CCTGCTATCAAGTGTTTATTGCTTTGTAGCCTTAAGTATCAGATTTCTAA
AAGTATTAAATTCCATAAAAGCTCTTCATGCCCATTGAAACTTATGAGTA
CTTTTTCTTTAAAACCTACCATATAACTTACTTTCTATTAATAGACTCCC
CGCATTTTTCAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_o10.g1 MSMg01no128_o10.g1 CHROMAT_FILE:
MSMg01no128_o10.g1 PHD_FILE: MSMg01no128_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:09 2005
         (333 letters)



>mm_chr19_20089429_20090162
          Length = 734

 Score =  472 bits (244), Expect = e-137
 Identities = 316/358 (88%), Gaps = 32/358 (8%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaactaaggacatgagcttctaccttagctggacatagtgatgtccgagttggcaggatg 61
           ||||||||||||||||      |||||| |||||||||| ||||| ||||||||||||||
Sbjct: 703 aaactaaggacatgag------ccttagatggacatagtaatgtcagagttggcaggatg 650

                                                                       
Query: 62  tctcatgtgtcagaacaatc--------aggtagcaaacacgagatgaaagtaacaacac 113
           ||||||||||||||||||||        ||||||||||||||||||||||||||||||||
Sbjct: 649 tctcatgtgtcagaacaatcatcgggttaggtagcaaacacgagatgaaagtaacaacac 590

                                                                       
Query: 114 aa---atactcgcagaagagtcaaaagagctgttatgcata--------------atata 156
           ||   |||| ||||||||| ||||||| |||||| ||||||              |||||
Sbjct: 589 aaatgatacacgcagaagaatcaaaagggctgttttgcataaaatcccttttatgatata 530

                                                                       
Query: 157 gaactaaaatggcagataaagatcatgccacaggatctagaataacaaatggtgtcatgg 216
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaactaaaatggaacataaagatcatgccacaggatctagaataacaaatggtgtcatgg 470

                                                                       
Query: 217 attgttcattatatactaggttccatgtgtactttttgctgtattg-tttattatttcat 275
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 469 attgttcattatatactaggttccatgtgtactttttgctgtattgatttattacttcat 410

                                                                     
Query: 276 aaatcatagtttaggtaaatatataataagtttgataaagattatctactactagaga 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaatcatagtttaggtaaatatataataagtttgataaagattatctactactagaga 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space:   234900
Effective search space used:   234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)