BAC Information

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BAC

Clone NameMSMg01-130I17
Chromosome19 (Build37)
Map Location 40,800,494 - 40,800,737
singlet/doubletsinglet
Overlap geneEntpd1
Upstream gene9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, EG667720
Downstream geneEG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130I17.T7 (MSMg01no130_i17.b1)MSMg01-130I17.TJ (MSMg01no130_i17.g1)
ACCAG338271AG338272
length717711
length of high quality
(start - end)
244 (78 - 321)39 (129 - 167)
definitionCHROMAT_FILE: MSMg01no130_i17.b1 PHD_FILE: MSMg01no130_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:23 2005CHROMAT_FILE: MSMg01no130_i17.g1 PHD_FILE: MSMg01no130_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATGGGCGGA
ATTCAGTTGCACTTTTCTGAATGTCCTTGGCCAGTTTCTGCCAGAGAGCC
TGATCCTTCCCATAGCACAGGAAGCTGTGTGTGTACACAGTATAGTCCTC
GCCATAGAGACGGAATTGCAGAGAGTTTTCTGGGGACTCTATAGTGCTGT
TTTGGGGCACGAAGGTGATTTGTGTGGAGGCTCCGCCGAGATCCAAAGCG
CCAAAGGTTTCCTGTTTCTGACTGTCTGAGATGAGGCTTAGCCAACTCTG
TTCCTGAAAGAAAAGACAGTGCTATTTTTCTCTGGACATCCTACTTGCCA
AGATGGACATCCAGGGACAGATCGTTCGCCCAAGTCTACTGCGATGCTCC
TACATCAGTATCAATAACCCCCCCCAGGGCTTTGATTACTCAGCTCTGAC
AAGAGCAGAGCAGAGGCCAAGAATATTATGGTTCATAAACAAGAACAAAT
CCCCACTCAGCCACCAGCTAATAGACTTGCGCCAGATAAGATTCTATTTT
TAAGCATCATCATGGGTATTAATGTGCCACCCGAGTCTGCTCTGAGGAAC
GAGTCACACCTCGGGGAGACTGCTAAGCACTCCTCACTTAGTACATACGA
CTTCATTTTGCTTTGCTTCACACCTAGCCATACTATGTTGTTTAGGCTGC
ACTCTCTTCTTGCTCTA
CAATGAAGTGTTAGGCCTGGTGGCCGCCTGGCTTTCCAATTTACCTGAAC
TATCGAAGGATTTGCCAAATTCCTCAGGGACCATATGGCTTCCTTCAGCA
GCAGATCTCAGCGCCAGCTACCCCGGCGTGTATGCTAAATGTTACATGTT
GGCGTGTTAAATAAAGCACTGTGCATAGTCTGTCCTGCTCTTGACCTCTG
GGTGCTGGTTTACTTTAGCTGTAAATTGTTTCTGTTTTTTGTTTTTGGAC
TCAGGTTCTTGCTATGTAGTCCAGCCAGGCTTTCAACTTGTGGCAATCCT
CCTGCCTTAGCTTCCCGAGTTCTTATTTTACACATGTTTAGACACATTGT
CTGGCTTTGAATAATGGTTCCCCCCCCCTGCCCAGGTAAAGATGATGCTT
CGGATTTAGAGTAATCCCCACACAGAAAAAAAAAAATCCCTGCCCCGGTG
ATGAGGGTTACTACGATGAACTCCACATATATATCAGAGAGCACTCTGCA
AGCCTCCAACAGTTTCCAATGTCAGGACTGTCCCTGGTTAGTCTGGAGTG
TTCTTTCCTGAGTTACCGGATGTGCTGGGATCAACTGCACCAACTGTATG
CCACATCCCACATACTGCATACCTCATGCTCGATTCACTGCAAACTGACC
GTTCTCTGTGACGATGACATCTGTGTGAAAGTTGTTGTACTTATGGATGT
GTCCACTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_i17.b1 MSMg01no130_i17.b1 CHROMAT_FILE:
MSMg01no130_i17.b1 PHD_FILE: MSMg01no130_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:23 2005
         (244 letters)



>mm_chr19_40800294_40800937
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggccagtttctgccagagagcctgatccttcccatagcacaggaagctgtgtgtgtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggccagtttctgccagagagcctgatccttcccatagcacaggaagctgtgtgtgtaca 385

                                                                       
Query: 61  cagtatagtcctcgccatagagacggaattgcagagagttttctggggactctatagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtatagtcctcgccatagagacggaattgcagagagttttctggggactctatagtgc 325

                                                                       
Query: 121 tgttttggggcacgaaggtgatttgtgtggaggctccgccgagatccaaagcgccaaagg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttttggggcacgaaggtgatctgtgtggaggctccgccgagatccaaagcgccaaagg 265

                                                                       
Query: 181 tttcctgtttctgactgtctgagatgaggcttagccaactctgttcctgaaagaaaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcctgtttctgactgtctgagatgaggcttagccaactctgttcctgaaagaaaagac 205

               
Query: 241 agtg 244
           ||||
Sbjct: 204 agtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)