BAC Information

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BAC

Clone NameMSMg01-131L17
Chromosome19 (Build37)
Map Location 60,743,341 - 60,743,559
singlet/doubletsinglet
Overlap genenone
Upstream geneRab11fip2, LOC100043087, LOC100043091, LOC100043093, D19Ertd737e, 4933412A08Rik, Prlhr, 2700078E11Rik
Downstream geneNanos1, Eif3s10, 1810055E12Rik, Sfxn4, Prdx3, Gprk5, LOC671322, BC029127, LOC100043112, EG547091, LOC433261, EG633057, Csf2ra, LOC100043120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131L17.T7 (MSMg01no131_l17.b1)MSMg01-131L17.TJ (MSMg01no131_l17.g1)
ACCAG339156AG339157
length721726
length of high quality
(start - end)
236 (126 - 361)286 (80 - 365)
definitionCHROMAT_FILE: MSMg01no131_l17.b1 PHD_FILE: MSMg01no131_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:03 2005CHROMAT_FILE: MSMg01no131_l17.g1 PHD_FILE: MSMg01no131_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATATCTAAATTTGCGGCGCTAAACGACTCCTATCCAAGAGGAGCCGCG
GAATTCCATTCTTGCGAAGAAGTCGGGGGCATTAAGAGAGGTTTTCCAAA
GTTTGTAAGGCTACATTTTGACCTATAGACAGATACATTTCCTTGGTGAC
ATTTCCATATTTTTCTGTCTGTAAAGTCAGCAGGTAGACATTTTAACAAT
CCAAGGAATATGGAATAGGATAAAGAATCCATGACTTCAAAGAAATCAGA
GTTGATATTTTCTATCTCAAATTTTGCAAAAAAAAAAACAAAAAACAAAA
CCTATACCTTAAACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTTTCTCTCTCTCCCCGCCGCCGTGTGTGTGTGTGTGTGATC
ACCTGCATGTACTGCACCGCAAAGAAAAAATTTCACGGGTGAGCAGGGAC
TGGTGTGTGAATGTATAGGCCACAGGTCACCCAGAGGTATTGTTCCTGAA
GCCATCTATCTAGTTTACTGCTAGAGTCTGTTTATCCAACTTTGATTTGA
CCCCATAGACTAGGTTTATAGCATAAACTGAAGAGAAAGTCCTCTATCTG
ATTGTTCCCTCGTGGTTATCCTCTCCGTAAAACTATACCAAACCCAGAGA
CTAATGGTCAAGCCAACAATTGCTTTGCTGACCTTATCTTGTATTTTTCT
TCTCTCTGATTCTCTCTGCCC
NNCCCCCGATGAAGTGGGAGGCCTGGCGGCCGCCTGGTCAACACGAGGAG
GTGAACTATAGAAGTTTCAAAAAAAGTCAATAACTCACTTAAAGAAATAC
AGGAGAACACTGCTAAAGAGTTACACCCCCCTTAAAGAAAAACAGGAAAA
CACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCA
AACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTG
ATGGAAATGAACAAAACCATTCTAGACCTAAAAAGGGAAGTAGACACAAT
AAAGAAAACCCAAAGTGAGGCGACGCTGTTTATAGAAACCCTAGGAAAGA
AATCTGGAACCATAGATGTCTGCATCAGCAACAGAATACAAGAGATGGAA
GAGAGAATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAAT
CAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAA
TCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAG
AATGAAGATTTTCAACTCAAAGGACCAGCATACATCTTCTACAAAATTAT
TGAAGAAAACTTCCCAAATCTAAAGAAAGAGAAGCCCATGAACATACAAG
AAGCCTACAGAACTCCCAATTAGACTGGAACAGAAAAGAAATTCCTCCCG
ACCCCATAATATCAAGAATACCAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_l17.b1 MSMg01no131_l17.b1 CHROMAT_FILE:
MSMg01no131_l17.b1 PHD_FILE: MSMg01no131_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:03 2005
         (236 letters)



>mm_chr19_60743172_60743805
          Length = 634

 Score =  416 bits (215), Expect = e-121
 Identities = 219/221 (99%), Gaps = 2/221 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagacagatacatttccttggtgacatttccatatttttctgtctgtaaagtcagcaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tagacagatacatttccttggtgacatttccatatttttctgtctgtaaagtcagcaggt 329

                                                                       
Query: 61  agacattttaacaatccaaggaatatggaataggataaagaatccatgacttcaaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agacattttaacaatccaaggaatatggaataggataaagaatccatgacttcaaagaaa 269

                                                                       
Query: 121 tcagagttgatattttctatctcaaattttgcaaaaaaaaaaacaaaaaacaaaacctat 180
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 268 tcagagttgatattttctatctcaaattttgcaaaaaaaaa--caaaaaacaaaacctat 211

                                                    
Query: 181 accttaaacatctctctctctctctctctctctctctctct 221
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 accttaaacatctctctctctctctctctctctctctctct 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 634
Length adjustment: 9
Effective length of query: 227
Effective length of database: 625
Effective search space:   141875
Effective search space used:   141875
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)