Query= MSMg01no132_n08.b1 MSMg01no132_n08.b1 CHROMAT_FILE:
MSMg01no132_n08.b1 PHD_FILE: MSMg01no132_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:28 2005
(620 letters)
>mm_chr19_31183145_31184169
Length = 1025
Score = 1081 bits (559), Expect = 0.0
Identities = 607/629 (96%), Gaps = 13/629 (2%)
Strand = Plus / Plus
Query: 1 aaagaggttcttaggaaaaaaacccacttcaaatttatccaaatttatcccaaatcagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaggttcttaggaaaaaaacccacttcaaatttatccaaatttatcccaaatcagtg 260
Query: 61 aactttaaatccttgtacagaaaacagaaatcaagggcacttgccagtgatagggcactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttaaatccttgtacagaaaacagaaatcaagggcacttgccagtgatagggcactt 320
Query: 121 gccagaaaacatttgacttaggttacaagtaaataactactatcctttgatcttaactta 180
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gccagaaaatatttgacttaggttacaagtaaataactactagcctttgatcttaactta 380
Query: 181 gtaaataagtccaagtagtgtatgctgttgctcatctctggtctagatgctgcagaatcc 240
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaatacgtccaagtagcgtatgctgttgctcatctctggtctagatgctgcagaatcc 440
Query: 241 agaacttgtaacggctaaagcaccatctcaggcaaactaagacagaatgttattttagac 300
|| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacttggaacggctaaagcaccgtctcaggcaaactaagacagaatgttattttagac 500
Query: 301 ttaatggtgtttaggtttttttccctttgctagattatgtcttggcttaagaaaatcttc 360
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 501 ttaatggtgtttaggtttttt-ccctttgctagattatgtcttggcttgagaaaatct-- 557
Query: 361 tgctttttttt--------aaataacattttacttgttgcttacagagtcggtctttttc 412
|||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 -gcttttttttttttttttaaataacattttacttgttgcttacagagtcggtctttttc 616
Query: 413 aacatgaaaaggatatgacacagtaactcctatccactcactcctgctgtcagtaaaaat 472
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aacaggaaaaggatatgacacagtaactcctatccactcactcctgctgtcagtaaaaat 676
Query: 473 gccctactgtacc-acttatacacatatttcagtcatttcccagatattttagagtacca 531
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gccctactgtaccgacttatacacatatttcagtcatttcccagatattttagagtacca 736
Query: 532 tggccttgctagaacagagaccctttaaggttcttttattatttccgggcagtgtaatga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tggccttgctagaacagagaccctttaaggttcttttattatttccgggcagtgtaatga 796
Query: 592 ttcacgcactgtctcgtacgtagcaagat 620
|||||||||||||||||||||||||||||
Sbjct: 797 ttcacgcactgtctcgtacgtagcaagat 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1025
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1015
Effective search space: 619150
Effective search space used: 619150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_n08.g1 MSMg01no132_n08.g1 CHROMAT_FILE:
MSMg01no132_n08.g1 PHD_FILE: MSMg01no132_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:28 2005
(540 letters)
>mm_chr19_31353790_31354730
Length = 941
Score = 783 bits (405), Expect = 0.0
Identities = 417/421 (99%), Gaps = 3/421 (0%)
Strand = Plus / Minus
Query: 1 ccgtgttgtgttg-acacatgtgaagagacacgaatgctgatccagccttggtcaagata 59
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ccgtgttgtgttgcacacatgtgaagagacacgaatgctgatccagccttggtcaagata 361
Query: 60 gtaagaagtgtatgtgcacaggaagaggcaaactgtctcatttcatccgaggcagatgta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtaagaagtgtatgtgcacaggaagaggcaaactgtctcatttcatccgaggcagatgta 301
Query: 120 gggtctctagaaagttagtctatggtcgtaatcagatgcaacaaattaatatgtatatag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gggtctctagaaagttagtctatggtcgtaatcagatgcaacaaattaatatgtatatag 241
Query: 180 aggtttcataaatatttaagtgaatactgagatatgtggagaagagaaggctcagttgct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aggtttcataaatatttaagtgaatactgagatatgtggagaagagaaggctcagttgct 181
Query: 240 aaaacatttgccacagaaggagggaaacaggagtttggtttccccaatattcacttttta 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaaacatttgccacagaaggagggaaacaggagtttggtttccccaatattcactttttt 121
Query: 300 aaaagcccagctcagcagtgtgtgtccataatcccactatggggagcaaaagagaggtgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aaaagcccagctcagcagtgtgtgtccataatcccactatggggagcaaaagagaggtgg 61
Query: 360 atgtctgaagggcttatctgtctgaatagatggcctccaggttc-agtgagaggccataa 418
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 60 atgtctgaagggcttatctgtctgaatagatggcctccaggt-ctagtgagaggccataa 2
Query: 419 a 419
|
Sbjct: 1 a 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
