BAC Information

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BAC

Clone NameMSMg01-133H06
Chromosome19 (Build37)
Map Location 55,471,962 - 55,472,144
singlet/doubletsinglet
Overlap geneVti1a
Upstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5, Zdhhc6
Downstream geneLOC100043479, Tcf7l2, Ppnr, LOC100043484, Habp2, Nrap, Casp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133H06.T7 (MSMg01no133_h06.b1)MSMg01-133H06.TJ (MSMg01no133_h06.g1)
ACCAG340429AG340430
length705717
length of high quality
(start - end)
183 (132 - 314)---
definitionCHROMAT_FILE: MSMg01no133_h06.b1 PHD_FILE: MSMg01no133_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:16 2005CHROMAT_FILE: MSMg01no133_h06.g1 PHD_FILE: MSMg01no133_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCACTTTCTTACCAGTGTTCTTACAGGTGATAAAATACACAGCTTCCA
TGTAAGAGTGCCTCCTTTCCTCTGCTGCCAAAATGAGATGAACACAGTCT
GGGGCATGTATCATGCCATGGGCATTGTGTGTGTTAACTATTCATTGCTA
TCTGCCCCATTCTTTCATGCATGTATTTTAGGTGTGTGCATGAATGTATG
TGCATCATGTGTATGACTGGTGCCCATGGAGGTTAGAAGAGGGTATCATA
TCCCCTGAAACTGGAGTTATTTATGACTGATAGCCAGCATATGAGTGGCC
AGGCATTTTTTTTTTTCACCGCCCCCCCCCAAACCAGTGTTCTAACACTG
AGTGTTCTAACCACTGAAAATCTATCCAAATGAACACCTGCCAACTGTTT
TGTAAATACATTTTGTTAAAGACACATATGCATGAGAGTCTATGAAGTTT
TGCCTAGCTCCAGAAAATATTAAATGTTGACCATTAAGATTCCTGATCTC
TCTTTGGTTTCCTTCTGTGACCCTGCGTTCCTACATCCCTGTCCTTCACT
CCTCAGGAAACGCCATTTTGCCTGCATGACCCTCTGAACACCTTTTCCCA
AAGTATTATCCATATGACTTCCCATTTCCCATATCCGCCATAATTCCTAT
CTCTT
CACGATGCTGAGAGAGGCCTGGCGACGCCTGAATTCAGAATAGGGGNGAA
CTATAGAATTATCCCAAAAATTCTAACTGCTCTTCATGTTAATTGTATGA
CCCAGACATGGTTGGTGCACATCTTCTCTAAAGTGGTGTGGTGAAGATTA
CAAGAACATATAAACCTAGTTCCTGCTACAAGGCTGACATAAAAAGCCAT
TCCATCATGGATACAAAAAAATGTGGTACATTTACACAATGGAGTACTAC
TCACCTATTAAAAACAACGAATCTATGAAATTCCTAGGCAAATGTTTGGA
CCTGGAGGCTCTCATCCTCGACTGTTTTACCTTAATCACAAAAGAACTCC
AATGATATGTACTCACTGATCACTGCACATCACCCTATACACTTTGCATA
GCTAGATATACAGTACTACTTGCCAAAATCATGACACTGACCAATAACTT
ACTACTCTAGCGCGTACTTCTTTGCCCCCTTTTATAATTGCCACCCACTC
ACTTTTGTATCCGATTTTCTTCCACATTTTTTGCTATTCGACACCCCATT
ACGCACCCTCTACTCCCTTGTTTTATTCTACGTATCTACTCCTCATCTAT
CCCCTACACTAATCTATCATTCGCCTTCACTCCCTCTCGTTTTGATCCTC
GTTCCGTGTTATATCTTGTCCTCCGTGTCATCTACTACTTCCCTCTACCT
TCCCCTATACCCTTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_h06.b1 MSMg01no133_h06.b1 CHROMAT_FILE:
MSMg01no133_h06.b1 PHD_FILE: MSMg01no133_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:16 2005
         (183 letters)



>mm_chr19_55471762_55472344
          Length = 583

 Score =  354 bits (183), Expect = e-102
 Identities = 183/183 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgagatgaacacagtctggggcatgtatcatgccatgggcattgtgtgtgttaactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatgagatgaacacagtctggggcatgtatcatgccatgggcattgtgtgtgttaactat 324

                                                                       
Query: 61  tcattgctatctgccccattctttcatgcatgtattttaggtgtgtgcatgaatgtatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcattgctatctgccccattctttcatgcatgtattttaggtgtgtgcatgaatgtatgt 264

                                                                       
Query: 121 gcatcatgtgtatgactggtgcccatggaggttagaagagggtatcatatcccctgaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcatcatgtgtatgactggtgcccatggaggttagaagagggtatcatatcccctgaaac 204

              
Query: 181 tgg 183
           |||
Sbjct: 203 tgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)