BAC Information

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BAC

Clone NameMSMg01-134N22
Chromosome19 (Build37)
Map Location 15,296,145 - 15,296,852
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225, EG635497
Downstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134N22.T7 (MSMg01no134_n22.b1)MSMg01-134N22.TJ (MSMg01no134_n22.g1)
ACCAG341477AG341478
length1,1081,114
length of high quality
(start - end)
769 (39 - 807)708 (141 - 848)
definitionCHROMAT_FILE: MSMg01no134_n22.b1 PHD_FILE: MSMg01no134_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:43 2005CHROMAT_FILE: MSMg01no134_n22.g1 PHD_FILE: MSMg01no134_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAGAAANNNNAAGGATCTGGCGCTAAGACTCACTAAGGGAGAGGATCC
GCGGAATTCACAATAGAGGAATCTCGATTGCTTAAGAAGTGCTTAGAAAA
TATCATCCTGAGAGAGGTAACCCAATCACAAAAGAACACACATGACAAGC
ACTCACTGATAAGTGAATATTAGCCCAGAAGCTCAGAATCCCCAAGAAAG
AATTCACAGACCACATGAAGCTCAAGAAGAAGGAAGACCAAAGTGTGGAT
GCTTTGGTCCTTAGAAGGGGGAAAAAATACTCATGGGAACAAGTGTAGAC
AAAGTGTAGAGCAGAGACTAAAGGGAAAGCCATCCAGAGACTGCTCTACC
TGAGGATCCATCCCATATACAGTCACCAAAGGCAGACACTATTGTGGATG
CCAAGATGCTTGCTGATAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTC
TGCCAGAACTTGACATATGCAGAGGCAGATGCTCCCAGCCAACCATTGAA
CTGATCACGAGGTCCCCAATAGAGGAGTTACAGAAAGGACTGAAGGAGCT
GAAGGGGTTTGCAACCTCGTAGGAAGAACAACAATATCAACCAACCAGAG
CTTCCAGAGTCTAAACCACCAACCAAGGAGTACACATGGAGGGACCCATG
GCTCCAGCTATATATATAGGGCATCAATGGGAGAAGAGGTCCTTGATCCC
ATGAAGGCTTGATGCCCCAGTGTAGGGGAATGTGAGGGCAGGGAGGCTGG
AGTGGGTGAGTGGACAGGGGCACACCCTCATAGAAGCAGGAGGAGGGGGG
ATGGGATAAGGGGGTTTGNTNNNNNNNNNTNNNNNNNNNNNNNNNTNNNN
TNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNNTTTTTNTTNNTTTTTTTT
TTTTTTTT
NNNCCAAATCTCTNNNAAAAGATGCCAGGCTGGGGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAACCCTTATAAAAG
CCTGCAGCAGCTTTCTGCGACTTTAAAGCTTCCACTGAGTTCCTCACACT
CTGACAGCAAATTGTTTGAAGTTTCCAAGGTTATAAAAACAGTCTTTCTT
CAAGAAAAAAATTAAGTTTTCTTCTGAATATAATTTTTAACTTTTCTTTG
TATTGCCAAGTTAAGACAGAGAATTAAAATTTAGTGGGTAAATGTATAAT
ATTGTTATAATGTCAGCTGGAAAGGCAGAATGGGTCTACAATTTCTTCCC
AGGAGTTAGGAATGAAACTCAGATTTACCATGGAAAGCCTTTGCCTCCAA
AATATTTCTATTTTCTACCCCTAAAATTCTTCAGAAAATAAAAGCACTCA
TGCCATAATTGGATATAAAGCTCATTATACAAATACCCTGCGGAGAAAAA
AAATCCCACATCATCATAAATTCATACTAATATAAACAAGATCAGGACTA
CAGTTGGGATGAAACTCAATTACAGTCTAAGGTCTAATTGTGAAGGTACA
TGTTCCTTTTCTATGTAGTAATATGCCATGATGCATTAAGACCCAAAGCT
ATGGATTGTTTACCACACAGAGATACTAGGGTCTGGCAAAGGAGAATAGC
CTCAAGCTACATGGGGCTGCACCTAGAGTGTACAGTGGCTCTATGACTAG
CTGGTAGGGGTCTATTGTACCCAATGAAACAGTTGTAAACTCACTTACTC
TAACCAATTATGTGGAAATGGTACACCACAGCTTGGTTTTACCATCCCCA
TCAGGATACCTTTGTTCTTGGAATAGACAGGAGTTGAGATGCTCTCAAAA
GAGCAAATCATGGACCCACAATCAATAGTATCATCACGACCCTCTTTCTG
AGATAAGATGGCTCTGGGCTGGTCCGTCAAAAAACCGCTCTGTTCCGGGC
CCTTTCCAAAAAAAAAAAAGGGTTTGGTTCCCCTAAAACACCGGGTTTGA
AATCTCCCCCCCTTTTTGGAAAAAAAAAGGCCCTTTGTGTGGGTTTCCTC
CCCCCCCCACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_n22.g1 MSMg01no134_n22.g1 CHROMAT_FILE:
MSMg01no134_n22.g1 PHD_FILE: MSMg01no134_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:43 2005
         (708 letters)



>mm_chr19_15295945_15297052
          Length = 1108

 Score = 1338 bits (692), Expect = 0.0
 Identities = 704/708 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcacactctgacagcaaattgtttgaagtttccaaggttataaaaacagtctttctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 908 tcctcacactctgacagcaaattgtttgaagtttccaaggttataaaaacagtcattctt 849

                                                                       
Query: 61  caagaaaaaaattaagttttcttctgaatataatttttaacttttctttgtattgccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 caagaaaaaaattaagttttcttctgaatataatttttaacttttctttgtattgccaag 789

                                                                       
Query: 121 ttaagacagagaattaaaatttagtgggtaaatgtataatattgttataatgtcagctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttaagacagagaattaaaatttagtgggtaaatgtataatattgttataatgtcagctgg 729

                                                                       
Query: 181 aaaggcagaatgggtctacaatttcttcccaggagttaggaatgaaactcagatttacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aaaggcagaatgggtctacaatttcttcccaggagttaggaatgaaactcagatttacca 669

                                                                       
Query: 241 tggaaagcctttgcctccaaaatatttctattttctacccctaaaattcttcagaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tggaaagcctttgcctccaaaatatttctattttctacccctaaaattcttcagaaaata 609

                                                                       
Query: 301 aaagcactcatgccataattggatataaagctcattatacaaataccctgcggagaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaagcactcatgccataattggatataaagctcattatacaaataccctgcggagaaaaa 549

                                                                       
Query: 361 aaatcccacatcatcataaattcatactaatataaacaagatcaggactacagttgggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaatcccacatcatcataaattcatactaatataaacaagatcaggactacagttgggat 489

                                                                       
Query: 421 gaaactcaattacagtctaaggtctaattgtgaaggtacatgttccttttctatgtagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gaaactcaattacagtctaaggtctaattgtgaaggtacatgttccttttctatgtagta 429

                                                                       
Query: 481 atatgccatgatgcattaagacccaaagctatggattgtttaccacacagagatactagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atatgccatgatgcattaagacccaaagctatggattgtttaccacacagagatactagg 369

                                                                       
Query: 541 gtctggcaaaggagaatagcctcaagctacatggggctgcacctagagtgtacagtggct 600
           |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 368 gtctggcaaaggagaataacctcaagctacatggggctgcgcctagattgtacagtggct 309

                                                                       
Query: 601 ctatgactagctggtaggggtctattgtacccaatgaaacagttgtaaactcacttactc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctatgactagctggtaggggtctattgtacccaatgaaacagttgtaaactcacttactc 249

                                                           
Query: 661 taaccaattatgtggaaatggtacaccacagcttggttttaccatccc 708
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 taaccaattatgtggaaatggtacaccacagcttggttttaccatccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space:   766404
Effective search space used:   766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)