Query= MSMg01no135_n12.b1 MSMg01no135_n12.b1 CHROMAT_FILE:
MSMg01no135_n12.b1 PHD_FILE: MSMg01no135_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:03 2005
(251 letters)
>mm_chr19_45868328_45868978
Length = 651
Score = 485 bits (251), Expect = e-142
Identities = 251/251 (100%)
Strand = Plus / Plus
Query: 1 acgccgtccttgtttctgtccatcttctgtaagaaggtagtcaggcaggagaatggggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgccgtccttgtttctgtccatcttctgtaagaaggtagtcaggcaggagaatggggga 260
Query: 61 ggggggaacaggagagagaaagatacttaggtaagtgcctttcggggccccggtgtcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggggaacaggagagagaaagatacttaggtaagtgcctttcggggccccggtgtcctt 320
Query: 121 ctgtccaccccagggccaccagcccacccagacccaggcacctggaagaagctctccacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtccaccccagggccaccagcccacccagacccaggcacctggaagaagctctccacg 380
Query: 181 tgttccctcggggcctcctcccggagggcagggtaggtgtacttgcccatcatgtcatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttccctcggggcctcctcccggagggcagggtaggtgtacttgcccatcatgtcatag 440
Query: 241 atggacttcat 251
|||||||||||
Sbjct: 441 atggacttcat 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space: 155364
Effective search space used: 155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no135_n12.g1 MSMg01no135_n12.g1 CHROMAT_FILE:
MSMg01no135_n12.g1 PHD_FILE: MSMg01no135_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:03 2005
(588 letters)
>mm_chr19_46005762_46006749
Length = 988
Score = 882 bits (456), Expect = 0.0
Identities = 475/482 (98%), Gaps = 2/482 (0%)
Strand = Plus / Minus
Query: 109 tcattggtcggagagatggctcagtggttaagagtgcatactgccatagcagagaacctg 168
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 988 tcattggtcagagagatggctcagtggttaagagtgcatactgccattgcagagaacctg 929
Query: 169 agagttgagttcccagcacccacgtcatgcggttcacaatagcctgtacgtctagttcca 228
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 agagttgagtttccagcacccacgtcatgcggttcacaatagcctgtacgtctagttcca 869
Query: 229 gagtgtcttacacctctagccttgtgggaacccacactc--gtgcctatacctacatata 286
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 868 gggtgtcttacacctctagccttgtgggaacccacactcatgtgcctatacctacatata 809
Query: 287 tacacattagtaaaaataaatctttaggaaagaaaatcaagattctttaaataaaggaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tacacattagtaaaaataaatctttaggaaagaaaatcaagattctttaaataaaggaag 749
Query: 347 gaaacatttgtgtgtgaagaaataccaagaaatatgtttgttgttttgttttggaaggga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaaacatttgtgtgtgaagaaataccaagaaatatgtttgttgttttgttttggaaggga 689
Query: 407 gaaagtacaagctacagtttgggttttgtgtatctcttcattatcactttcaagcttact 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gaaagtacaagctacagtttgggttttgtgtatctcttcattatcactttcaagcttact 629
Query: 467 gcatggagatctgggtagatgccttgacgaagatttctggaagcttttgcactgtaaaga 526
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 628 gcatggagatctgggtagatgccttgacgcagatttctggaagcttttgcactgtaaaga 569
Query: 527 tatgtaaaactggcatatcatctcattttctctgtgctagcatcaaagcagtcactaata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tatgtaaaactggcatatcatctcattttctctgtgctagcatcaaagcagtcactaata 509
Query: 587 tt 588
||
Sbjct: 508 tt 507
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
