NNNNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGGCCACCTTCCCAGAGATGCTCAAACACTAGCTGGAA
ACTTCATCTTAAGAAGCATTCTAGGCTGGTGTGAGGCATGAGAACTTCCA
TACTAGACTTTGTGAAACATAGAACTCCATCTTTCAGAAGTCCATGTGTG
CAAGGAACTCCTTACAGCCAACAACATCACCTATGTGGGGATCCGAGCTT
ATCTTCCCAGCAAGTTCTGTGACTTTCCACATATCCCTTGACCTCAGGCT
TCCTCAGTTCCCTTCACTACAGAATGAGGTAAATGAATATTATGTTCTTA
AGAGTTTGATGTGAGCACTCAATGTATTAACATGGCAAACATATTTATTG
CCACATATGTGACATATCTGCCCGTACCTGGGCACTAGACTTCTCATGTA
GACACCACAGCCAAGTGCATCTTTGTCCACCCTATTCACCTTCTTTACCT
TCCTCTGACCCCCTCAGAAAAGCTGTGGGAAGCAGACACCGTTAGTAATG
AGATGAAGAATGGGCCGGCTGTTCCCTCATAAATGGGAGCCCTTCTCAAC
CTTAAGGGTCCATAGCAAATCTAAGTCTTATCACCAGTTGATTTTGTTCT
TTTCAATTTGATGTATACCCTTTGCGAAACCAGGTTTCGTTTTCTTATTT
CCAGTGTATTTCACCAAGAGCTCA

NNNNNNCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTGTGGGGTGGGGTA
GGGGGATTTATCTGNNNNNNNNTTTNNTCCCCCGGNNANNNATTNNNNNT
TTAATNNNNNNNNCNTTTTTTTTNTTTTTTTTTTTTNNTCTTTTTTTCTT
TTTTCTTATTCTCCACACTTCAAAACTCTTAATTACACNCTTATCATGAC
AACCACTCTTCACCCTATTTCTTTTCCATTACATTCTCCATATCTTCAAT
ATCTCTTCCCCTGGCTTTTACATATCCCANACATTCCCGGGCCGCCACCC
TTTTTTTTTTTTTCTGGTCTTTAGCTGCTTAACCCACATATTTGATTATT
TGTACCCCCGCCCCACCTACACACGGGTTTTCATTTATAATATTCGTTAT
AGTGGGAGGAAGGCANACATCCCTACAAATAAATTATGTATTTTATGGTG
TTAAGAGGTCTGATTGTTTCGTCCGCGTATATCGAGATAGCCTCTATATG
CTTTTTTATATTACGTCGAAATCATTTACTGCCTCCTTCTCTCTTATCTC
CAAATATAACCGATCCTATTAATCGTATCGCCGTGCGACGGACGCCCTAA
TACCCCGAAATGTTCGGAACATAAATAACTGCTATGAATCGTCTCGTTTT
GTTGTGTATGGCGCTCTTTTCTCTTAGCTCTGACCACTTGGGTACTCTCG
CTTTTAGTATGTTCTCACCGAGTACCAAAGACTCGTGTATAAGATTCGTG
TTTGTACGCTAGTTGGTACTATCTCTACTATACTGTTATCTTCGTTCGCG
CTCTCGCATCCTTCTGCCN

Query= MSMg01no136_n17.b1 MSMg01no136_n17.b1 CHROMAT_FILE:
MSMg01no136_n17.b1 PHD_FILE: MSMg01no136_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:22 2005
         (674 letters)



>mm_chr19_21217483_21218556
          Length = 1074

 Score = 1203 bits (622), Expect = 0.0
 Identities = 658/670 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaggccaccttcccagagatgctcaaacactagctggaaacttcatcttaaga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggccacattcccagagatgctcaaacactagctggaaacttcatcttaaga 264

                                                                       
Query: 65  agcattctaggctggtgtgaggcatgagaacttccatactagactttgtgaaacatagaa 124
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 265 agcattctaggctggggtgaggcatgtgaacttccatactagactttgtgaaacacagaa 324

                                                                       
Query: 125 ctccatctttcagaagtccatgtgtgcaaggaactccttacagccaacaacatcacctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctccatctttcagaagtccatgtgtgcaaggaactccttacagccaacaacatcacctat 384

                                                                       
Query: 185 gtggggatccgagcttatcttcccagcaagttctgtgactttccacatatcccttgacct 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtggggatctgagcttatcttcccagcaagttctgtgactttccacatatcccttgacct 444

                                                                       
Query: 245 caggcttcctcagttcccttcactacagaatgaggtaaatgaatattatgttcttaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 caggcttcctcagttcccttcactacagaatgaggtaaatgaatattatattcttaagag 504

                                                                       
Query: 305 tttgatgtgagcactcaatgtattaacatggcaaacatatttattgccacatatgtgaca 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 tttgatgtgagcactcaatgtattaacatggcaaacatatttattgccacgtatgtgaca 564

                                                                       
Query: 365 tatctgcccgtacctgggcactagacttctcatgtagacaccacagccaagtgcatcttt 424
           |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatctgcctgtcccggggcactagacttctcatgtagacaccacagccaagtgcatcttt 624

                                                                       
Query: 425 gtccaccctattcaccttctttaccttcctctgaccccctcagaaaagctgtgggaagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtccaccctattcaccttctttaccttcctctgaccccctcagaaaagctgtgggaagca 684

                                                                       
Query: 485 gacaccgttagtaatgagatgaagaatgggccggctgttccctcataaatgggagccctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gacaccgttagtaatgagatgaagaatgggccggctgttccctcataaatgggagccctt 744

                                                                       
Query: 545 ctcaaccttaagggtccatagcaaatctaagtcttatcaccagttgattttgttcttttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcaaccttaagggtccatagcaaatctaagtcttatcaccagttgattttgttcttttc 804

                                                                       
Query: 605 aatttgatgtataccctttgcgaaaccaggtttcgttttcttatttccagtgtatttcac 664
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 805 aatttgatgtataccctttgtgaaaccaggtttcgttttcttgtttccagtgtatttcac 864

                     
Query: 665 caagagctca 674
           ||||||||||
Sbjct: 865 caagagctca 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)