Query= MSMg01no137_a08.b1 MSMg01no137_a08.b1 CHROMAT_FILE:
MSMg01no137_a08.b1 PHD_FILE: MSMg01no137_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:34 2005
(314 letters)
>mm_chr19_13857442_13858156
Length = 715
Score = 511 bits (264), Expect = e-149
Identities = 300/312 (96%), Gaps = 3/312 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttcccatactttctcctcgttcacttcctggttttattcattttactgttcc 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcttttcccatactttctccttgttcacttcctggttttattcattttactgttcc 456
Query: 65 aaaaactcagataagcaatttcttctctcctgaagcacattacctaaaatgtcatcatat 124
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caaaactcagataggcaatttcttctctcctgaagcacattacctaaaatgtcatcatat 396
Query: 125 ctattatctattcactcttcctccgtttgatttaagtacaaactgtattacctta-ttta 183
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 395 ctattatctagtcactcttcctccgtttcatttaagtacaaactgtattaccttatttta 336
Query: 184 tgcttataatttatttaattgattaatttacatgtttatgatttgcttcatgtaatgtga 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 335 tgcttataatttatttaattgattaatttacatgtttatgatttgcttcatgtattgcga 276
Query: 244 cataagagccaagaacccaacatttccttcttttggtgatt-tgcattaaggtacggaaa 302
||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||
Sbjct: 275 cataagagccaagaacccaacatttccttcttttgttgattct-cattaaggtacagaaa 217
Query: 303 atgtgatttttt 314
||||||||||||
Sbjct: 216 atgtgatttttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space: 215330
Effective search space used: 215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_a08.g1 MSMg01no137_a08.g1 CHROMAT_FILE:
MSMg01no137_a08.g1 PHD_FILE: MSMg01no137_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:35 2005
(292 letters)
>mm_chr19_13609531_13610223
Length = 693
Score = 429 bits (222), Expect = e-125
Identities = 276/294 (93%), Gaps = 3/294 (1%)
Strand = Plus / Plus
Query: 1 agttgatgttctttcatattaaacaaaacattgacacatgaataagagactatattcatg 60
||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 201 agttgttgttctttcatgttaaacaaaatattgacacatgaacaagagactatattcatg 260
Query: 61 gctaagatttcatggtagtgttgaactagcatatcttctcatttcttaatcttctctttg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gctaagatttcatggtagtgttgaactagcatatcttttcatttcttaatcttctctttg 320
Query: 121 gaatgtttcatgatttctaagttacattgatggagaatatttcagaggcaattgagtttt 180
|||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct: 321 gaatctttcatgatttctaagttacattgatggagaatatttcagaggaaactaagtttt 380
Query: 181 t-cttgtgaacttcacaggtgcctcagaatgtcaga-tgccattatttatcattttcact 238
| |||||||| ||||||||||||||||||||||| | || | |||||||||||||||||
Sbjct: 381 ttcttgtgaatttcacaggtgcctcagaatgtca-agtgaaaatatttatcattttcact 439
Query: 239 gtcatttatttcatcactctgattgggaaccttgggatgattacagatagacgg 292
||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcatttatttgaccactctgattgggaaccttgggatgattacagatagacgg 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space: 193572
Effective search space used: 193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
