Query= MSMg01no140_a02.b1 MSMg01no140_a02.b1 CHROMAT_FILE:
MSMg01no140_a02.b1 PHD_FILE: MSMg01no140_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:35 2005
(532 letters)
>mm_chr19_24474779_24475706
Length = 928
Score = 905 bits (468), Expect = 0.0
Identities = 515/532 (96%), Gaps = 4/532 (0%)
Strand = Plus / Minus
Query: 1 caccgttgacaactgacaccactgacaactagtggcatcgcagaatgcagggaaagaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 caccgttgacaactgacaccactgacaactagtggcatcgcagaatgcagggaaagaata 669
Query: 61 ttaaaataacaaagttgcttattttttttcaggcactagatgtactcgaatctaagtctt 120
||||||||||||||||||| ||||||| ||||||||||||| ||| || ||| || |||
Sbjct: 668 ttaaaataacaaagttgct--tttttttccaggcactagatgcacttgagtctcagcctt 611
Query: 121 ttgtatcttgcttcctatgatcttaagtcaaaggatatataaaaaaaaaaatcaagacac 180
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct: 610 ttgtatcttgcttcctatgatcttaagtcaaaagatattt--aaaaaaaaatcaagacac 553
Query: 181 tttcctgtgttctgcacggtccaacacttggatagttgttctcaggtgaaggatgacaga 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 552 tttcctgtgttctgcacggtccaatacttggatagttgttctcaggtgaaggatgacaga 493
Query: 241 tattcagagcgaagcaagcaaaatgcttaaatgatggtttgaggagttgctcttttgtat 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgttcagagcgaagcaagcaaaatgcttaaatgatggtttgaggagttgctcttttgtat 433
Query: 301 atgcaagcttctgaacagtactggttgactgtgggaggtcatttcaggcaaattcaacaa 360
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atacaagcttctgaacggtactggttgactgtgggaggtcatttcaggcaaattcaacaa 373
Query: 361 gagttaatgcgaggttcaccccctgttaaatgtctgtctgggtgctcagtcctggatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 372 gagttaatgcgaggttcaccccctgttaaatgtctgtctgggtgctcagtcctgggtgac 313
Query: 421 tgaagatgacagggccttaggaaaagaactagatattggatacagggtagacagattctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgaagatgacagggccttaggaaaagaactagatattggatacagggtagacagattctg 253
Query: 481 aaatagtgccatatgtccatgatggtggaatagcatccaaacagattgaaaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaatagtgccatatgtccatgatggtggaatagcatccaaacagattgaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 928
Length adjustment: 10
Effective length of query: 522
Effective length of database: 918
Effective search space: 479196
Effective search space used: 479196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_a02.g1 MSMg01no140_a02.g1 CHROMAT_FILE:
MSMg01no140_a02.g1 PHD_FILE: MSMg01no140_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:35 2005
(481 letters)
>mm_chr19_24332870_24333750
Length = 881
Score = 890 bits (460), Expect = 0.0
Identities = 473/478 (98%), Gaps = 2/478 (0%)
Strand = Plus / Plus
Query: 4 gggatatgatttcctgttgctttggccttacagaatggaaggtagtgagttcccttggca 63
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 gggatatgatttcctgttgctttggccttacaggatggaaggtagtgagttcccttggca 263
Query: 64 accctggatccccacaaagttcacccttacagacattgttttttctttagaggtggttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accctggatccccacaaagttcacccttacagacattgttttttctttagaggtggttaa 323
Query: 124 tgggtttaaattggggcaggtgcaatgtgagaaggcttattacaaagtgactatttaatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgggtttaaattggggcaggtgcaatgtgagaaggcttattacaaagtgactatttaatg 383
Query: 184 aaaatatcaaacttattagacttagctctaacacatgtgcacgtgcacacacacacacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaatatcaaacttattagacttagctctaacacatgtgcacgtgcacacacacacacac 443
Query: 244 acacacacacacacacacacagagaagctaggaacatagttcaacgacaaaacattcagt 303
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 acacacacacacacacacacaga--agctaggaacatagttcaacgacaaaacattcagt 501
Query: 304 gagcatgctaaggccctgagtccaattcccagcaccagagaaaacaaatctagaataaca 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 502 gagcatgctaaggccctgagtccaatccccagcaccagagaaaacaaatctagaataaca 561
Query: 364 acaaaatagctttctagtgtttatagaccgaacatgtagcaatgtagctacaatgttgcc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 562 acaaaatagctttctagtgtttatagaccgaacatgtagcaatgtagctacaatgttgtc 621
Query: 424 tgtggtgactagactacggaatgaggaaacactcccgggtcttaggcttgtgttgtgg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtggtgactagactacggaatgaggaaacactcccgggtcttaggcttgtgttgtgg 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
