BAC Information

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BAC

Clone NameMSMg01-143C22
Chromosome19 (Build37)
Map Location 7,529,760 - 7,530,237
singlet/doubletsinglet
Overlap geneRtn3
Upstream geneNrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, LOC100039547
Downstream gene5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143C22.T7 (MSMg01no143_c22.b1)MSMg01-143C22.TJ (MSMg01no143_c22.g1)
ACCAG347601AG347602
length680688
length of high quality
(start - end)		39 (251 - 289)610 (69 - 678)
definitionCHROMAT_FILE: MSMg01no143_c22.b1 PHD_FILE: MSMg01no143_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:40 2005CHROMAT_FILE: MSMg01no143_c22.g1 PHD_FILE: MSMg01no143_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAAACGACCACNATATTTTCCGACCCGCNGAANCNA
CNGNGATTGCGNGCACCGGAGAGCNNCNAGNCCCANCNCANCNCNGAANC
NGNCANNNGNCNCGCGCCCNACNGGNACNCAGAAAGCCANAANAAAACGN
CAACCCANCGGCAAAAGACCACCGAGCAGGGGCACCAGACANCANGAAAC
AAAGNGAGAAGGNACCAAGACNCGGCACAAGAAGCCAACANAAGTTGTGG
CACGAGAACAGGCAGGNCCCAGGAGCAAGCCAAACCACGGCAACNGACNA
GGCNGACCATTTTATAGCTTGGCNACGGCGAGACNNCCAAAAAGGAACCA
AAAGTTCGACGCCCCCCCCACAGGCCCAAGAGAANANCCACGCNGGNCAC
AGAACCGGGCCCCCACCAAAGCCAAGGAAACGGCAACCACCCAAACAAAA
AACAAACAAGACAGGGCCACACAGAGAACCCCAGGCCGCCCCGGAACACA
CACAGAAGACCAGGCAGCCCACGAAAACAGAAGACCGCCAGCCCCAGACA
CCCACGAGCCGAAAAAAAAGGCGAAGAGAAAACACGGCACGACACAGGAG
AAAGCCACACGAAAACACAAACCCCCGGCACCCCACACCCTTTTTTTTTT
AGCGCGAACACCAGGGCAATGATTCTTCTC

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGCAGGGAAACTCGGTAAATGTAACTTTTAA
TTAATTTACTGTATTCCACAGGGTTTATGCTTTGAAAGTAGGTGACCATT
ATTACAGTGTTCTTTTGGAGTAATACTTAAGAGAAACTCGTTCATTCTTA
TACTTCAGGCCTACTGAACAGTCTCCAGACAACAGGACATTTAATAGTAC
CAGAAGATCTTCATGTTTCTTTTTTATTTGAAATGATCTCTTTCCTAGTA
GATGGCTTGCAGGAAAATGGCTTTAAATGCTGTTTATTTTGCAAAGTGTA
TTAGTTACTTTTTATTCCTGTGAGAAACACCATGACCAAGGCAACTTAAA
AAAGAAAGTATTCACCCTCATTTGAATGAATAAATAAATAAATAAAAGCC
GGGCATGGTGGCTCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAG
GTGGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTGAGTTCCAAGA
CAACCAGGGCTACACAGAGAAACCCTGTCTTGAAAAATCGAACAGAAAAG
AAAGTAAGTAAGTATTCAAAAAGGCTTACTTAGCACCATAGTCATGGCAC
ATACCTTTAATTCCAGCACTCGGAAGACAGAGGCAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_c22.g1 MSMg01no143_c22.g1 CHROMAT_FILE:
MSMg01no143_c22.g1 PHD_FILE: MSMg01no143_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:40 2005
         (610 letters)



>mm_chr19_7529760_7530769
          Length = 1010

 Score =  835 bits (432), Expect = 0.0
 Identities = 471/490 (96%), Gaps = 12/490 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcagggaaactcggtaaatgtaacttttaattaatttactgtattccacagggtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctgcagggaaactcggtaaatgtaacttttaattaatttactgtattccacagggtttat 419

                                                                       
Query: 61  gctttgaaagtaggtgaccattattacagtgttcttttggagtaatacttaagagaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gctttgaaagtaggtgaccattattacagtgttcttttggagtaatacttaagagaaact 359

                                                                       
Query: 121 cgttcattcttatacttcaggcctactgaacagtctccagacaacaggacatttaatagt 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cattcattcttatacttcaggcctactgaacagtctccagacaacaggacatttaatagt 299

                                                                       
Query: 181 accagaagatcttcatgtttcttttttatttgaaatgatctctttcctagtagatggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 accagaagatcttcatgtttcttttttatttgaaatgatctctttcctagtagatggctt 239

                                                                       
Query: 241 gcaggaaaatggctttaaatgctgtttattttgcaaagtgtattagttactttttattcc 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 238 gcaggaaaatggctttaaatgctgtttattttgcaaagtgtattagttactttttatttc 179

                                                                       
Query: 301 tgtgagaaacaccatgaccaaggcaacttaaaaaagaaagtattcaccctcatttgaatg 360
           |||||||||||||||||||||||||||||||||||||||||||      ||||    |  
Sbjct: 178 tgtgagaaacaccatgaccaaggcaacttaaaaaagaaagtat------tcat----a-- 131

                                                                       
Query: 361 aataaataaataaataaaagccgggcatggtggctcacgcctttaatcccagcactcggg 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aataagtaaataaataaaagccgggcatggtggctcacgcctttaatcccagcactcggg 71

                                                                       
Query: 421 aggcagaggcaggtggatttctgagttccaggccagcctggtctacaaagtgagttccaa 480
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 70  aggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttccag 11

                     
Query: 481 gacaaccagg 490
           |||| |||||
Sbjct: 10  gacagccagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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