Query= MSMg01no143_d01.b1 MSMg01no143_d01.b1 CHROMAT_FILE:
MSMg01no143_d01.b1 PHD_FILE: MSMg01no143_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:40 2005
(608 letters)
>mm_chr19_16395031_16396038
Length = 1008
Score = 1060 bits (548), Expect = 0.0
Identities = 591/612 (96%), Gaps = 13/612 (2%)
Strand = Plus / Plus
Query: 1 tcatctatgttctggacactctaccttttttttttttttttttaatagccaggtagcctt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 tcatctatgttctggacactctacctttttttttttttt-----atagccaggtagcctt 260
Query: 61 tccaacagaaataggctgttacatatcatatcctggtattgtcctaacaaccacaaggat 120
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 261 tccaacagaaataggctgttacatatcacatcctggtattgttctagcaaccacaaggat 320
Query: 121 agcacaaggatacaggttccataagccctgctctggtggtcttcatagaatgtaaggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcacaaggatacaggttccataagccctgctctggtggtcttcatagaatgtaaggagc 380
Query: 181 cctccttcctctgatgtgtttgagatcattgtccccttgttttcttctttggtgtatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctccttcctctgatgtgtttgagatcattgtccccttgttttcttctttggtgtatgtt 440
Query: 241 cctgctg----ttttttgtctccttttctttcagtggatctttgcttttgcctttatatt 296
||||||| |||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 441 cctgctgcacc----ttgtctccttttctctcagtggatctttgcttttacctttatatt 496
Query: 297 ggctgttctcctgttagaaaatatgtaaatctcagatttctaactacgtgagaatcagga 356
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 497 ggctgttctcctgttagaaaatatgtaaatctcagatttctaactatgtgagaatcagga 556
Query: 357 tctgctgtaaacatttgctaagaggttgggatgtagtcactttctccctagaattcttct 416
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 557 tctgctgtaaacatttgctaagaggttgggatgtaatcactttctccctagaattcttct 616
Query: 417 ggagatgagactccatgcaggccacatgccagcagtcctggaagtagagaccaagcatga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggagatgagactccatgcaggccacatgccagcagtcctggaagtagagaccaagcatga 676
Query: 477 tcttctcttttctacctgatgagctcatgttcacccttgaagacccaactaggagtcacc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tcttctcttttctacctgatgagctcatgttcacccttgaagacccaactaggagtcacc 736
Query: 537 ctttctgaatatctgacctggtaccaaagatagctaccatgtcacccgccctagctcctt 596
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 737 ctttctgaatatctgacctggtaccaaagatagctaccatgtcacccgtcctagctcctt 796
Query: 597 gtacatatgtct 608
||||||||||||
Sbjct: 797 gtacatatgtct 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_d01.g1 MSMg01no143_d01.g1 CHROMAT_FILE:
MSMg01no143_d01.g1 PHD_FILE: MSMg01no143_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:40 2005
(623 letters)
>mm_chr19_16530248_16531271
Length = 1024
Score = 1147 bits (593), Expect = 0.0
Identities = 617/625 (98%), Gaps = 3/625 (0%)
Strand = Plus / Minus
Query: 1 aattcctggatatatcattgagtattgagaatctaagaggacagctgaattaacagta-t 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 824 aattcctggatatatcattgagtattgagaatctaagaggacagctgaattaacagtatt 765
Query: 60 tttttttttaagtacactatctggcaagttgttattacaaaagagcccaaaccttcatgg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tttttttttaagtacactatctggcaagttgttattacaaaagagcccaaaccttcatgg 705
Query: 120 cttctgggctgataggactagatcagttcatggttatcagaaccatggtgggtcttttca 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cttctgggctgataggactaggtcagttcatggttatcagaaccatggtgggtcttttca 645
Query: 180 agcggtgccttctcatttcctgccctacttcctcatggtaaaaacagctgctgagctctt 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 644 agcggtgccttctcatttcctgccctacttcctcatggtgaaaacagctgctgagctctt 585
Query: 240 agtactggt-atcctctccttccctaggagggaagactcacttcccattaaggaagcaac 298
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 agtact-gtgaccctctccttccctaggagggaagactcacttcccattaaggaagcaac 526
Query: 299 tcagaaattgcctacattgattccattggtatcccaatgcctgtaacttagccataccac 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 525 tcagaaattgcctacattgattccattggtatcccagtgcctgtaacttagccataccac 466
Query: 359 tacctcttaacgtcaaggaaagctttgaaatggagtctttaagtaggtgtgcctagatga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tacctcttaacgtcaaggaaagctttgaaatggagtctttaagtaggtgtgcctagatga 406
Query: 419 aaatctgagtatcgaaggaggaggacgtagtggatatctgagtgacatttatgcttccta 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 405 aaatctgagtatcgaaggaggaggaagtagtggatatctgagtgacatttatgcttccta 346
Query: 479 agccactcttactgcttaaaagaaagatcaagttcagagtgttcacatgcctgcatcaag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agccactcttactgcttaaaagaaagatcaagttcagagtgttcacatgcctgcatcaag 286
Query: 539 aaaatgtgatcacccaggcaacatggtgcaagcaatgaatgaatgcttcctttggaatat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaaatgtgatcacccaggcaacatggtgcaagcaatgaatgaatgcttcctttggaatat 226
Query: 599 cagtttgtcatgcagcatcggagcg 623
|||||||||||||||||||||||||
Sbjct: 225 cagtttgtcatgcagcatcggagcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space: 621582
Effective search space used: 621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
