BAC Information

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BAC

Clone NameMSMg01-143N08
Chromosome19 (Build37)
Map Location 23,719,357 - 23,719,691
singlet/doubletsinglet
Overlap gene1700028P14Rik
Upstream geneTrpm3, Klf9, Smc5, Mamdc2, LOC670565
Downstream geneLOC226030, EG625193, Ptar1, Apba1, Gm967, 1700021P04Rik, Tjp2, Fxn, LOC667743, Pip5k1b, LOC100042457, 2900009I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143N08.T7 (MSMg01no143_n08.b1)MSMg01-143N08.TJ (MSMg01no143_n08.g1)
ACCAG348073AG348074
length702709
length of high quality
(start - end)
364 (40 - 403)338 (72 - 409)
definitionCHROMAT_FILE: MSMg01no143_n08.b1 PHD_FILE: MSMg01no143_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:29 2005CHROMAT_FILE: MSMg01no143_n08.g1 PHD_FILE: MSMg01no143_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXAATCTGAGAGAGGATCCGCGGAA
TTCTCACCTCAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCC
ACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGA
TGTTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGACGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGGATCCCACAATACCTCTCCTGGGCATA
TATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGTT
CATATCTCCCCCACCCATAATAGCCAGAAGCTGGAAAGAATCCAGATGCC
CCTCAACAGAGGAACGGATACAGAAAATGTGGTACATTTACACAATGGAA
TACTACTCAGCTATTAAAAAAAATGAATTCATGAAATTCCTAGGCTAATG
GATGGATCTGGAGGGTATCATCCTGAGTGAAGTATTCCTTTCACCCAGGT
ACTCGTCCTATATGTACTTCCTGATACTCGGATATTACCCCTGCTACCTA
CGGTACCCTAGATATTAATATTCTTCTTGTCAATTTCTGCAATTTCCGAA
GT
ACATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCAGATCCTTCCTTAAAACCTAATGAC
TATGGAGCTTTGAAGGTACCACCTGCATGAAAGTCTGTTTTGTTTTGCTG
GCATTTGTGAAACAGCAGTTTTGTGGGAAAGATCACTATGGTTTCAGTGT
GAAGTTGTCTGTCCAGCCTGCAGCATCTCAGTTTAAACACTCGTTCCCAA
GCAGCTAGTGCTCTTTGGGGGAGGTTTCTGACATTCCAGGTGAGACTTAC
CTGGAGGAAGTGGGTCCCTGGTGGCTGATCCTTGGGGGATATCTTGTCCC
TGTCCCCTCCTGTCTCCCTTTGTTTCCTGTTGGCAATTAGGTGAAGAAGC
CCCTTCACACACGACCTCTTCCTGCCATAGTGTCTGGCCTGAGTATGCGG
TTAAAATCTTGTTGTGCAAGCCTTAGCGTGTTGCCCCCCTCTTCTGATGC
TTACCAATGTTCATTTTACCGTGCCTCCTTTGCTCTTGTCTTGCATTTCT
CTGGTTTTCGCTATTCCCATACACCCCGGTATCCCTTCTTTCCCACTTCC
TGCCTTATATCCCTTTTTCTCCTTTTTCCCTTTGTCCCTTTTTGCCCCTT
TTCAACTCATACATTTATACCATATTCCCCTTCTCCCCTCTTGTTTTTGT
TACCCGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_n08.g1 MSMg01no143_n08.g1 CHROMAT_FILE:
MSMg01no143_n08.g1 PHD_FILE: MSMg01no143_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:29 2005
         (338 letters)



>mm_chr19_23719332_23720070
          Length = 739

 Score =  623 bits (322), Expect = 0.0
 Identities = 333/338 (98%), Gaps = 4/338 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   atcagatccttcctt-aaaacctaatgactatggagctttgaaggtaccacctgcatgaa 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atcagatccttccttaaaaacctaatgactatggagctttgaaggtaccacctgcatgaa 301

                                                                       
Query: 61  agtctgttttgttttgctggcatttgtgaaacagcagttttgtgggaaagatcactatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agtctgttttgttttgctggcatttgtgaaacagcagttttgtgggaaagatcactatgg 241

                                                                       
Query: 121 tttcagtgtgaagttgtctgtccagcctgcagcatctcagtttaaacactcgttcccaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tttcagtgtgaagttgtctgtccagcctgcagcatctcagtttaaacactcgttcccaag 181

                                                                       
Query: 181 cagctagtgctctttgggggaggtttctgacattccaggtgagacttacctggaggaagt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 180 cagctagtgctctttgggggaggtttctgacattccaggtgagacttacctgtaggaagt 121

                                                                       
Query: 241 gggtccctggtggctgatccttgggggatatcttgtccctgtcccctcctgtctcccttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gggtccctggtggctgatccttgggggatatcttgtccctgtcccctcctgtctcccttt 61

                                                 
Query: 301 gtttcctgttggcaattaggtgaagaagccccttcaca 338
           |||||||||||||||||||||   ||||||||||||||
Sbjct: 60  gtttcctgttggcaattaggt---gaagccccttcaca 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 739
Length adjustment: 9
Effective length of query: 329
Effective length of database: 730
Effective search space:   240170
Effective search space used:   240170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)